Factsheet for Solyc07g063600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049550	Potato	plastid	100.0	100.0
Solyc12g011450.1.1	Tomato	plastid	93.89	92.83
GSMUA_AchrUn_...	Banana	plastid	79.77	90.48
GSMUA_Achr1P08770_001	Banana	plastid, unclear	81.3	88.38
OQU90095	Sorghum	plastid	89.31	87.31
Bra002999.1-P	Field mustard	plastid	87.79	86.79
AT5G54270.1	Thale cress	plastid	87.79	86.79
Zm00001d021784_P001	Maize	plastid	88.93	86.62
Os07t0562700-01	Rice	extracellular, plastid	85.88	84.59
TraesCS1B01G451100.1	Wheat	plastid	85.88	83.96
TraesCS1D01G428200.1	Wheat	plastid	85.88	83.96
TraesCS2A01G204800.1	Wheat	plastid	85.88	83.96
HORVU2Hr1G040780.7	Barley	plastid	84.73	81.62
CDY28778	Canola	plastid	74.81	76.56
Solyc08g067320.1.1	Tomato	plastid	26.34	75.82
Solyc02g070990.1.1	Tomato	plastid	70.99	70.19
Solyc02g071000.1.1	Tomato	nucleus, plastid	70.61	69.81
Solyc02g071010.1.1	Tomato	plastid	70.61	69.81
Solyc02g071030.1.1	Tomato	plastid	70.61	69.81
Solyc02g070980.1.1	Tomato	nucleus, plastid	70.61	69.81
Solyc02g070970.1.1	Tomato	plastid	70.61	69.81
Solyc02g070950.1.1	Tomato	plastid	70.61	69.81
Solyc02g070940.1.1	Tomato	plastid	70.61	69.81
Solyc03g005780.1.1	Tomato	plastid	70.61	69.29
Solyc03g005760.1.1	Tomato	nucleus	70.23	68.91
Solyc03g005770.1.1	Tomato	nucleus	70.23	68.91
Solyc07g047850.2.1	Tomato	plastid	69.47	68.68
Solyc12g006140.1.1	Tomato	plastid	69.08	68.3
Solyc08g067330.1.1	Tomato	plastid	22.9	61.22
Zm00001d006592_P001	Maize	plastid	26.72	56.91
Solyc06g063370.2.1	Tomato	plastid	44.27	40.56
Solyc05g056050.2.1	Tomato	plastid	33.59	35.77
Solyc05g056070.2.1	Tomato	plastid	33.21	35.37
Solyc10g007690.2.1	Tomato	plastid	34.73	33.33
Solyc12g011280.1.1	Tomato	plastid	33.97	32.6
Solyc12g009200.1.1	Tomato	nucleus, plastid	32.06	32.31
Solyc03g115900.2.1	Tomato	plastid	30.53	31.87
Solyc06g069730.2.1	Tomato	plastid	29.77	31.2
Solyc09g014520.2.1	Tomato	plastid	33.21	30.53
Solyc10g006230.2.1	Tomato	plastid	30.92	30.0
Solyc07g022900.2.1	Tomato	plastid	29.01	29.01
Solyc01g105030.2.1	Tomato	plastid	27.48	28.12
Solyc01g105050.2.1	Tomato	plastid	27.1	27.73
Solyc04g082920.2.1	Tomato	plastid	21.76	26.15

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329
UniProt:K4CH43	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF11	SUPFAM:SSF103511	EnsemblPlantsGene:Solyc07g063600.2
EnsemblPlants:Solyc07g063600.2.1	UniParc:UPI000276BE52	:	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4CH43]

Coordinates

chr7:-:66038831..66040547

Molecular Weight (calculated)

28396.0 Da

IEP (calculated)

5.050

GRAVY (calculated)

0.031

Length

262 amino acids

Sequence
(BLAST)

001: MAATGSSATV VRATPFLGQT KYANPLRDIV PMGSARFTMS NDLWYGPDRV KYLGPFSAQT PSYLTGEFPG DYGWDTAGLS ADPEAFAKNR ALEVIHGRWA
101: MLGAFGCITP EVLEKWVKVD FKEPVWFKAG AQIFSEGGLD YLGNPNLVHA QSILAVLGFQ VVLMGLVEGF RINGLPGVGE GNNLYPGGQY FDPLGLADDP
201: TTFAELKVKE IKNGRLAMFS MFGFFVQAIV TGKGPLENLL DHLDNPVANN AWVYATKFVP GS

Best Arabidopsis Sequence Match ( AT5G54270.1 )
(BLAST)

001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA

Arabidopsis Description

LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.