Factsheet for Solyc09g014520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 9

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01530.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021871	Potato	plastid	98.25	98.25
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	46.67	91.1
KRH75874	Soybean	mitochondrion, nucleus, plastid	91.23	89.66
KRH65776	Soybean	nucleus, plastid	90.88	89.31
Bra029732.1-P	Field mustard	plastid	87.37	86.46
CDY44667	Canola	plastid	87.37	86.46
CDY53084	Canola	plastid	87.02	85.81
Bra028906.1-P	Field mustard	plastid	86.32	85.42
CDY04834	Canola	plastid	85.96	85.37
AT5G01530.1	Thale cress	plastid	86.32	84.83
AT3G08940.2	Thale cress	plastid	85.26	84.67
TraesCS2D01G209900.1	Wheat	plastid	84.21	83.92
TraesCS2B01G233400.1	Wheat	plastid	84.21	83.92
TraesCS2A01G206200.1	Wheat	plastid	84.21	83.92
Zm00001d006587_P001	Maize	plastid	85.26	83.51
EER99537	Sorghum	plastid	84.21	83.33
Zm00001d021763_P001	Maize	plastid	84.56	82.82
Os07t0558400-01	Rice	plasma membrane, plastid	83.86	82.41
VIT_08s0007g02190.t01	Wine grape	plastid	84.91	70.76
HORVU5Hr1G013200.1	Barley	plastid	70.18	70.67
Solyc08g067320.1.1	Tomato	plastid	14.04	43.96
Solyc05g056070.2.1	Tomato	plastid	34.39	39.84
Solyc05g056050.2.1	Tomato	plastid	34.39	39.84
Solyc06g069730.2.1	Tomato	plastid	31.93	36.4
Solyc03g115900.2.1	Tomato	plastid	31.93	36.26
Solyc02g071000.1.1	Tomato	nucleus, plastid	33.33	35.85
Solyc02g070970.1.1	Tomato	plastid	32.98	35.47
Solyc02g070940.1.1	Tomato	plastid	32.98	35.47
Solyc02g070950.1.1	Tomato	plastid	32.98	35.47
Solyc02g071010.1.1	Tomato	plastid	32.98	35.47
Solyc02g071030.1.1	Tomato	plastid	32.98	35.47
Solyc12g009200.1.1	Tomato	nucleus, plastid	32.28	35.38
Solyc03g005780.1.1	Tomato	plastid	32.98	35.21
Solyc02g070980.1.1	Tomato	nucleus, plastid	32.63	35.09
Solyc02g070990.1.1	Tomato	plastid	32.63	35.09
Solyc03g005760.1.1	Tomato	nucleus	32.63	34.83
Solyc03g005770.1.1	Tomato	nucleus	32.63	34.83
Solyc07g047850.2.1	Tomato	plastid	31.58	33.96
Solyc12g006140.1.1	Tomato	plastid	31.58	33.96
Solyc10g006230.2.1	Tomato	plastid	31.58	33.33
Solyc07g063600.2.1	Tomato	nucleus	30.53	33.21
Solyc01g105050.2.1	Tomato	plastid	29.82	33.2
Solyc12g011450.1.1	Tomato	plastid	30.53	32.83
Solyc01g105030.2.1	Tomato	plastid	29.12	32.42
Solyc07g022900.2.1	Tomato	plastid	28.07	30.53
Solyc06g063370.2.1	Tomato	plastid	30.18	30.07
Solyc12g011280.1.1	Tomato	plastid	27.72	28.94
Solyc10g007690.2.1	Tomato	plastid	26.67	27.84
Solyc08g067330.1.1	Tomato	plastid	9.47	27.55
Solyc04g082920.2.1	Tomato	plastid	18.25	23.85

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329
UniProt:K4CRS9	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF6	SUPFAM:SSF103511	EnsemblPlantsGene:Solyc09g014520.2
EnsemblPlants:Solyc09g014520.2.1	UniParc:UPI000276B918	SEG:seg	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4CRS9]

Coordinates

chr9:-:6145784..6147813

Molecular Weight (calculated)

31144.2 Da

IEP (calculated)

6.040

GRAVY (calculated)

-0.075

Length

285 amino acids

Sequence
(BLAST)

001: MATAAATSSF IGTRLPEIHS GSGRVQARFG FGQKKAAPKK AAKKQIPDRP LWYPGAKAPE YLDGSLVGDY GFDPFGLGKP AEYLQFDLDS LDQNLAKNLA
101: GDIIGTRTEV ADVKSTPFQP YSEVFGLQRF RECELIHGRW AMLATLGALT VEWLTGITWQ DAGKVELVEG SSYLGQPLPF SITTLIWIEV LVIGYIEFQR
201: NAELDPEKRL YPGGSFFDPL GLAADPEKKA TLQLAEIKHA RLAMVAFLGF AVQAAATGKG PLNNWATHLS DPLHTTIFDT FGFFS

Best Arabidopsis Sequence Match ( AT3G08940.2 )
(BLAST)

001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS

Arabidopsis Description

LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.