Factsheet for Zm00001d021763_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 20701693
plastid: 21196305
plastid: 22065420
plastid: 22833285
plastid: 23198870
mitochondrion: 27297264

msms PMID: 20701693 doi

A Campos, PK Carvajal-Vallejos, E Villalobos, CF Franco, AM Almeida, AV Coelho, JM Torné, M Santos

Instituto de Tecnologia Química e Biológica (ITQB), Universidade Nova de Lisboa, Oeiras, Portugal.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22833285 doi

R Fristedt, W Wasilewska, E Romanowska, AV Vener

Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 21196305

XY Liu, YD Wu, ZY Shen, Z Shen, HH Li, XM Yu, XF Yan, CH Guo, BC Wang

Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01530.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006587_P001	Maize	plastid	97.25	97.25
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	39.52	95.83
EER99537	Sorghum	plastid	93.81	94.79
Os07t0558400-01	Rice	plasma membrane, plastid	91.41	91.72
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	45.7	91.1
TraesCS2B01G233400.1	Wheat	plastid	86.94	88.46
TraesCS2A01G206200.1	Wheat	plastid	86.6	88.11
TraesCS2D01G209900.1	Wheat	plastid	86.6	88.11
Solyc09g014520.2.1	Tomato	plastid	82.82	84.56
KRH75874	Soybean	mitochondrion, nucleus, plastid	84.19	84.48
KRH65776	Soybean	nucleus, plastid	83.51	83.79
Bra029732.1-P	Field mustard	plastid	82.47	83.33
CDY44667	Canola	plastid	82.47	83.33
PGSC0003DMT400021871	Potato	plastid	81.44	83.16
CDY53084	Canola	plastid	82.47	83.05
Bra028906.1-P	Field mustard	plastid	81.1	81.94
CDY04834	Canola	plastid	80.76	81.88
AT5G01530.1	Thale cress	plastid	81.44	81.72
AT3G08940.2	Thale cress	plastid	80.41	81.53
VIT_08s0007g02190.t01	Wine grape	plastid	79.38	67.54
Zm00001d032051_P001	Maize	mitochondrion	12.37	40.0
Zm00001d015385_P001	Maize	plastid	32.99	39.18
Zm00001d006663_P001	Maize	plastid	32.99	36.92
Zm00001d032197_P001	Maize	plastid	30.58	36.03
Zm00001d021906_P001	Maize	plastid	33.33	35.93
Zm00001d009589_P001	Maize	plastid	32.65	35.85
Zm00001d050403_P001	Maize	plastid	29.9	35.66
Zm00001d039040_P001	Maize	plastid	32.3	35.34
Zm00001d021435_P001	Maize	plastid	31.62	35.11
Zm00001d011285_P001	Maize	plastid	31.62	34.85
Zm00001d044402_P001	Maize	plastid	31.62	34.85
Zm00001d044401_P001	Maize	plastid	31.62	34.85
Zm00001d044399_P001	Maize	plastid	31.62	34.85
Zm00001d044396_P001	Maize	plastid	31.62	34.85
Zm00001d005814_P002	Maize	plastid	31.62	33.95
Zm00001d026599_P001	Maize	plastid	28.87	33.87
Zm00001d021784_P001	Maize	plastid	31.27	33.83
Zm00001d001857_P001	Maize	plastid	29.21	33.6
Zm00001d018157_P001	Maize	plastid	30.24	32.71
Zm00001d033132_P001	Maize	plastid	28.52	31.92
Zm00001d033136_P001	Maize	plastid	28.52	31.92
Zm00001d007267_P002	Maize	plastid	30.93	31.8
Zm00001d048998_P001	Maize	plastid	30.58	31.45
Zm00001d006592_P001	Maize	plastid	12.37	29.27
Zm00001d046786_P001	Maize	plastid	26.8	29.21
Zm00001d013766_P001	Maize	plastid	13.75	27.78
Zm00001d020002_P002	Maize	plastid	29.21	26.98
Zm00001d040012_P001	Maize	plastid	12.37	26.47
Zm00001d024372_P001	Maize	plastid	19.93	24.47
Zm00001d011218_P001	Maize	plastid	13.4	23.78

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	EntrezGene:542478	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
EMBL:EU967037	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	InterPro:IPR023329	UniProt:O24561	ProteinID:ONM58298.1	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF6	SUPFAM:SSF103511	UniParc:UPI000009FB47	EMBL:Z50801	EnsemblPlantsGene:Zm00001d021763	EnsemblPlants:Zm00001d021763_P001
EnsemblPlants:Zm00001d021763_T001	SEG:seg	:	:	:	:

Description

photosystem II subunit29 photosystem II subunit29

Coordinates

chr7:-:162636525..162637839

Molecular Weight (calculated)

31386.4 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.061

Length

291 amino acids

Sequence
(BLAST)

001: MASSVAAAAS TFLGTRLADP APQNGRIVAR FGFGLGGKAK PAPKKVAKTS TSSDRPLWFP GAVAPDYLDG SLVGDYGFDP FGLGKPVEYL QFELDSLDQN
101: LAKNEAGGII GTRFESSEVK STPLQPYSEV FGLQRFRECE LIHGRWAMLA TLGALSVEWL TGVTWQDAGK VELVDGSSYL GQPLPFSIST LIWIEVLVIG
201: YIEFQRNAEL DPEKRLYPGG SYFDPLGLAA DPEKKERLQL AEIKHARLAM VAFLGFAVQA AATGKGPLNN WATHLSDPLH TTIFDTFGGS S

Best Arabidopsis Sequence Match ( AT5G01530.1 )
(BLAST)

001: MAATSAAAAA ASSIMGTRVA PGIHPGSGRF TAVFGFGKKK AAPKKSAKKT VTTDRPLWYP GAISPDWLDG SLVGDYGFDP FGLGKPAEYL QFDIDSLDQN
101: LAKNLAGDVI GTRTEAADAK STPFQPYSEV FGIQRFRECE LIHGRWAMLA TLGALSVEWL TGVTWQDAGK VELVDGSSYL GQPLPFSIST LIWIEVLVIG
201: YIEFQRNAEL DSEKRLYPGG KFFDPLGLAA DPEKTAQLQL AEIKHARLAM VAFLGFAVQA AATGKGPLNN WATHLSDPLH TTIIDTFSSS

Arabidopsis Description

LHCB4.1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q0WW97]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.