Factsheet for Zm00001d006587_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01530.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021763_P001	Maize	plastid	97.25	97.25
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	39.52	95.83
EER99537	Sorghum	plastid	93.47	94.44
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	45.7	91.1
Os07t0558400-01	Rice	plasma membrane, plastid	90.38	90.69
TraesCS2B01G233400.1	Wheat	plastid	87.97	89.51
TraesCS2D01G209900.1	Wheat	plastid	87.63	89.16
TraesCS2A01G206200.1	Wheat	plastid	87.63	89.16
Solyc09g014520.2.1	Tomato	plastid	83.51	85.26
KRH75874	Soybean	mitochondrion, nucleus, plastid	84.54	84.83
PGSC0003DMT400021871	Potato	plastid	82.13	83.86
KRH65776	Soybean	nucleus, plastid	83.16	83.45
CDY44667	Canola	plastid	82.47	83.33
Bra029732.1-P	Field mustard	plastid	82.47	83.33
CDY53084	Canola	plastid	82.47	83.05
AT3G08940.2	Thale cress	plastid	81.1	82.23
AT5G01530.1	Thale cress	plastid	81.1	81.38
Bra028906.1-P	Field mustard	plastid	80.41	81.25
CDY04834	Canola	plastid	80.07	81.18
VIT_08s0007g02190.t01	Wine grape	plastid	78.69	66.96
Zm00001d032051_P001	Maize	mitochondrion	12.37	40.0
Zm00001d015385_P001	Maize	plastid	32.99	39.18
Zm00001d006663_P001	Maize	plastid	32.65	36.54
Zm00001d032197_P001	Maize	plastid	30.58	36.03
Zm00001d050403_P001	Maize	plastid	29.9	35.66
Zm00001d021906_P001	Maize	plastid	32.99	35.56
Zm00001d009589_P001	Maize	plastid	31.96	35.09
Zm00001d039040_P001	Maize	plastid	31.62	34.59
Zm00001d021435_P001	Maize	plastid	30.93	34.35
Zm00001d011285_P001	Maize	plastid	30.93	34.09
Zm00001d044402_P001	Maize	plastid	30.93	34.09
Zm00001d044401_P001	Maize	plastid	30.93	34.09
Zm00001d044399_P001	Maize	plastid	30.93	34.09
Zm00001d044396_P001	Maize	plastid	30.93	34.09
Zm00001d005814_P002	Maize	plastid	31.62	33.95
Zm00001d026599_P001	Maize	plastid	28.52	33.47
Zm00001d021784_P001	Maize	plastid	30.93	33.46
Zm00001d001857_P001	Maize	plastid	28.87	33.2
Zm00001d018157_P001	Maize	plastid	29.55	31.97
Zm00001d033132_P001	Maize	plastid	27.84	31.15
Zm00001d033136_P001	Maize	plastid	27.84	31.15
Zm00001d007267_P002	Maize	plastid	30.24	31.1
Zm00001d048998_P001	Maize	plastid	29.9	30.74
Zm00001d006592_P001	Maize	plastid	12.71	30.08
Zm00001d046786_P001	Maize	plastid	26.46	28.84
Zm00001d013766_P001	Maize	plastid	13.75	27.78
Zm00001d020002_P002	Maize	plastid	29.21	26.98
Zm00001d040012_P001	Maize	plastid	12.37	26.47
Zm00001d024372_P001	Maize	plastid	20.27	24.89
Zm00001d011218_P001	Maize	plastid	13.4	23.78

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	EntrezGene:100216729	UniProt:B4FJG1	EMBL:BT037249	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	ProteinID:ONM24320.1	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF6	SUPFAM:SSF103511	UniParc:UPI00017B6FF0	EnsemblPlantsGene:Zm00001d006587	EnsemblPlants:Zm00001d006587_P001	EnsemblPlants:Zm00001d006587_T001
SEG:seg	:	:	:	:	:

Description

Chlorophyll a-b binding protein CP29.1 chloroplastic

Coordinates

chr2:-:211693320..211694733

Molecular Weight (calculated)

31412.4 Da

IEP (calculated)

5.153

GRAVY (calculated)

-0.034

Length

291 amino acids

Sequence
(BLAST)

001: MASSVAAAAS TFLGTRLADP APQNGRIVAR FGFGGGKPKA AVPKKVAKTS ISSDRPLWFP GAVAPDYLDG SLVGDYGFDP FGLGKPVEYL QFELDSLDQN
101: LAKNEAGGII GTRFESSDVK STPLQPYSEV FGLQRFRECE LIHGRWAMLA TLGALTVEWL TGVTWQDAGK VELVDGSSYL GQPLPFTIST LIWIEVLVIG
201: YIEFQRNAEL DPEKRLYPGG SYFDPLALAA DPEKKERLQL AEIKHARLAM VAFLGFAVQA AATGKGPLNN WATHLSDPLH TTIFDTFGGS S

Best Arabidopsis Sequence Match ( AT5G01530.1 )
(BLAST)

001: MAATSAAAAA ASSIMGTRVA PGIHPGSGRF TAVFGFGKKK AAPKKSAKKT VTTDRPLWYP GAISPDWLDG SLVGDYGFDP FGLGKPAEYL QFDIDSLDQN
101: LAKNLAGDVI GTRTEAADAK STPFQPYSEV FGIQRFRECE LIHGRWAMLA TLGALSVEWL TGVTWQDAGK VELVDGSSYL GQPLPFSIST LIWIEVLVIG
201: YIEFQRNAEL DSEKRLYPGG KFFDPLGLAA DPEKTAQLQL AEIKHARLAM VAFLGFAVQA AATGKGPLNN WATHLSDPLH TTIIDTFSSS

Arabidopsis Description

LHCB4.1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q0WW97]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.