Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032051_P001 | Maize | mitochondrion | 40.24 | 73.33 |
| Zm00001d040012_P001 | Maize | plastid | 43.9 | 52.94 |
| Zm00001d001857_P001 | Maize | plastid | 54.88 | 35.57 |
| Zm00001d026599_P001 | Maize | plastid | 49.39 | 32.66 |
| TraesCS2A01G342600.1 | Wheat | plastid | 50.61 | 32.55 |
| TraesCS2B01G340300.1 | Wheat | plastid | 50.61 | 32.55 |
| TraesCS2D01G320900.1 | Wheat | plastid | 50.61 | 32.55 |
| Solyc01g105030.2.1 | Tomato | plastid | 45.73 | 29.3 |
| PGSC0003DMT400032791 | Potato | plastid | 45.12 | 28.91 |
| PGSC0003DMT400032790 | Potato | plastid | 44.51 | 28.52 |
| Solyc01g105050.2.1 | Tomato | plastid | 44.51 | 28.52 |
| Bra026099.1-P | Field mustard | plastid | 44.51 | 28.29 |
| VIT_12s0055g01110.t01 | Wine grape | plastid | 43.9 | 28.02 |
| KRH10515 | Soybean | mitochondrion, nucleus, plastid | 43.9 | 27.69 |
| KRH43915 | Soybean | mitochondrion, nucleus, plastid | 43.9 | 27.59 |
| Bra016650.1-P | Field mustard | plastid | 42.68 | 27.24 |
| AT1G15820.1 | Thale cress | plastid | 42.68 | 27.13 |
| Bra026745.1-P | Field mustard | plastid | 42.68 | 27.03 |
| HORVU2Hr1G079910.1 | Barley | cytosol | 29.88 | 24.14 |
| Zm00001d006592_P001 | Maize | plastid | 17.07 | 22.76 |
| Zm00001d050403_P001 | Maize | plastid | 28.66 | 19.26 |
| Zm00001d032197_P001 | Maize | plastid | 27.44 | 18.22 |
| Zm00001d006663_P001 | Maize | plastid | 28.66 | 18.08 |
| Zm00001d013766_P001 | Maize | plastid | 15.85 | 18.06 |
| Zm00001d021906_P001 | Maize | plastid | 28.66 | 17.41 |
| Zm00001d005814_P002 | Maize | plastid | 28.66 | 17.34 |
| Zm00001d018157_P001 | Maize | plastid | 27.44 | 16.73 |
| Zm00001d046786_P001 | Maize | plastid | 23.17 | 14.23 |
| Zm00001d006587_P001 | Maize | plastid | 23.78 | 13.4 |
| Zm00001d021763_P001 | Maize | plastid | 23.78 | 13.4 |
| Zm00001d020002_P002 | Maize | plastid | 24.39 | 12.7 |
| Zm00001d015385_P001 | Maize | plastid | 18.9 | 12.65 |
| Zm00001d039040_P001 | Maize | plastid | 20.12 | 12.41 |
| Zm00001d011285_P001 | Maize | plastid | 19.51 | 12.12 |
| Zm00001d044402_P001 | Maize | plastid | 19.51 | 12.12 |
| Zm00001d044396_P001 | Maize | plastid | 19.51 | 12.12 |
| Zm00001d044399_P001 | Maize | plastid | 19.51 | 12.12 |
| Zm00001d044401_P001 | Maize | plastid | 19.51 | 12.12 |
| Zm00001d009589_P001 | Maize | plastid | 19.51 | 12.08 |
| Zm00001d021435_P001 | Maize | plastid | 18.9 | 11.83 |
| Zm00001d033132_P001 | Maize | plastid | 18.29 | 11.54 |
| Zm00001d033136_P001 | Maize | plastid | 18.29 | 11.54 |
| Zm00001d007267_P002 | Maize | plastid | 17.68 | 10.25 |
| Zm00001d048998_P001 | Maize | plastid | 17.68 | 10.25 |
| Zm00001d021784_P001 | Maize | plastid | 15.24 | 9.29 |
| GSMUA_Achr10P... | Banana | unclear | 7.93 | 8.72 |
| Zm00001d024372_P001 | Maize | plastid | 11.59 | 8.02 |
| CDX83967 | Canola | extracellular, vacuole | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.3460.10 | MapMan:35.1 | UniProt:A0A1D6FY06 | ProteinID:AQK96232.1 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind |
| InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 |
| GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 |
| GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 |
| GO:GO:0019538 | InterPro:IPR023329 | PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF2 | SUPFAM:SSF103511 |
| UniParc:UPI000843C403 | EnsemblPlantsGene:Zm00001d011218 | EnsemblPlants:Zm00001d011218_P001 | EnsemblPlants:Zm00001d011218_T001 | SEG:seg | : |
Description
light harvesting complex photosystem II subunit 6
Coordinates
chr8:-:143280907..143281556
Molecular Weight (calculated)
17614.1 Da
IEP (calculated)
12.212
GRAVY (calculated)
-0.553
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVSTSATA PAAVLKTPFL GARRALANAA APKPAPRAPR RRRGRRQEVV DPPSSSTRPG STDHPVPRRQ ARARQCRRAQ ARAARSSPSP RPPPRSCGSA
101: EFINPPWLDG SLPGDFGFDP LGLGKDPAFL KWYREAELIH GRSAMAAVLG IFMGQPRFGD CGRA
101: EFINPPWLDG SLPGDFGFDP LGLGKDPAFL KWYREAELIH GRSAMAAVLG IFMGQPRFGD CGRA
001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL
Arabidopsis Description
LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.