Factsheet for GSMUA_Achr10P30470_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 1
plastid 3
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83967	Canola	extracellular, vacuole	14.09	91.3
VIT_12s0055g01110.t01	Wine grape	plastid	85.23	49.42
KRH10515	Soybean	mitochondrion, nucleus, plastid	85.91	49.23
OQU82564	Sorghum	plastid	83.89	49.02
PGSC0003DMT400032791	Potato	plastid	83.89	48.83
Solyc01g105030.2.1	Tomato	plastid	83.89	48.83
KRH43915	Soybean	mitochondrion, nucleus, plastid	84.56	48.28
Bra016650.1-P	Field mustard	plastid	82.55	47.86
TraesCS2B01G340300.1	Wheat	plastid	81.88	47.84
TraesCS2A01G342600.1	Wheat	plastid	81.88	47.84
TraesCS2D01G320900.1	Wheat	plastid	81.88	47.84
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	80.54	47.62
Bra026099.1-P	Field mustard	plastid	81.88	47.29
Solyc01g105050.2.1	Tomato	plastid	81.21	47.27
PGSC0003DMT400032790	Potato	plastid	81.21	47.27
Bra026745.1-P	Field mustard	plastid	81.88	47.1
AT1G15820.1	Thale cress	plastid	79.19	45.74
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	81.21	41.3
HORVU2Hr1G079910.1	Barley	cytosol	40.94	30.05
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	28.19	28.77
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	20.81	23.31
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	20.81	23.31
GSMUA_Achr7P13020_001	Banana	plastid	35.57	19.49
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	12.08	18.95
GSMUA_Achr9P02810_001	Banana	plastid	28.19	17.28
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	27.52	16.73
GSMUA_Achr4P07890_001	Banana	plastid	17.45	16.35
GSMUA_Achr2P06350_001	Banana	unclear	26.17	16.18
GSMUA_Achr6P31940_001	Banana	plastid	26.17	16.18
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	28.86	16.1
GSMUA_Achr2P14960_001	Banana	plastid	26.85	15.94
GSMUA_Achr4P24090_001	Banana	unclear	26.85	15.87
GSMUA_Achr4P33040_001	Banana	plastid, unclear	27.52	15.53
GSMUA_Achr3P04110_001	Banana	plastid	26.17	14.23
GSMUA_Achr1P08770_001	Banana	plastid, unclear	21.48	13.28
GSMUA_Achr6P12670_001	Banana	plasma membrane	24.83	13.26
GSMUA_Achr6P20660_001	Banana	mitochondrion	18.12	13.17
GSMUA_AchrUn_...	Banana	plastid	20.13	12.99
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	21.48	12.85
GSMUA_Achr3P02780_001	Banana	plastid	24.83	12.76
GSMUA_Achr10P...	Banana	plastid	24.16	12.5
GSMUA_Achr9P27480_001	Banana	mitochondrion	26.17	12.11
Zm00001d011218_P001	Maize	plastid	8.72	7.93
GSMUA_Achr9P18200_001	Banana	plastid	6.71	7.3

Protein Annotations

MapMan:1.1.1.1.4	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr10G30470_001
EnsemblPlants:GSMUA_Achr10P30470_001	EnsemblPlants:GSMUA_Achr10T30470_001	InterPro:IPR023329	UniProt:M0RMS1	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF28	SUPFAM:SSF103511	UniParc:UPI000296A40B	:	:	:

Description

Chlorophyll a-b binding protein CP24 10A, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G30470_001]

Coordinates

chr10:-:32666627..32667076

Molecular Weight (calculated)

16375.7 Da

IEP (calculated)

5.160

GRAVY (calculated)

0.199

Length

149 amino acids

Sequence
(BLAST)

001: MAAVVGIFIG QAWSGVPWFE AGADLGAIAP FSFGSLLGMQ LIFMGRVESK RWVDFFNLES QSVEWATPWY RTAENFANAT GEQGYPGGKF FDPLCFAGTL
101: RDGVYVPDVE KHERLKVAEI KHARIAMLAM LVFYFEAGQS KTPLGALGV

Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL

Arabidopsis Description

LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.