Factsheet for GSMUA_Achr10P15270_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P03080_001
GSMUA_Achr3P25160_001
GSMUA_Achr4P00500_001
GSMUA_Achr4P08560_001
GSMUA_Achr4P25150_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P10870_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001
GSMUA_Achr7P24480_001
GSMUA_Achr9P29140_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29910.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT1G29910.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT1G29910.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT1G29910.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944
AT1G29920.1	GSMUA_Achr4P25150_001	AT3G44880.1	22366162
AT1G29920.1	GSMUA_Achr10P...	AT4G13250.1	22366162
AT1G29920.1	GSMUA_Achr7P10870_001	AT4G13250.1	22366162
AT1G29920.1	GSMUA_Achr9P29140_001	AT4G37000.1	22366162
AT1G29920.1	GSMUA_Achr2P03080_001	AT5G04900.1	22366162
AT1G29930.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT1G29930.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT1G29930.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT1G29930.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT1G29930.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT1G29930.1	GSMUA_AchrUn_...	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	98.5	98.5
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	96.24	79.5
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	96.24	79.5
CDY30369	Canola	plastid	87.97	76.97
GSMUA_Achr4P07890_001	Banana	plastid	78.2	65.41
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	99.25	49.44
Bra022976.1-P	Field mustard	plastid	96.24	48.12
CDX79562	Canola	plastid	96.24	48.12
CDY17247	Canola	plastid	96.24	48.12
CDX84316	Canola	plastid	96.24	48.12
CDX84647	Canola	plastid	96.24	48.12
CDX90218	Canola	plastid	96.24	47.94
CDY66768	Canola	plastid	96.24	47.94
CDY43676	Canola	plastid	96.24	47.94
CDY35271	Canola	plastid	96.24	47.94
CDY26306	Canola	plastid	96.24	47.94
Bra030181.1-P	Field mustard	plastid	96.24	47.94
Bra010807.1-P	Field mustard	plastid	96.24	47.94
Bra005425.1-P	Field mustard	plastid	95.49	47.74
CDY17248	Canola	plastid	95.49	47.74
CDX99866	Canola	plastid	95.49	47.57
AT2G34420.1	Thale cress	plastid	94.74	47.55
AT2G34430.1	Thale cress	plastid	94.74	47.37
CDX98158	Canola	plastid	94.74	47.19
Bra030182.1-P	Field mustard	plastid	94.74	47.19
CDY43198	Canola	plastid	94.74	47.19
AT1G29920.1	Thale cress	plastid	93.98	46.82
AT1G29910.1	Thale cress	plastid	93.98	46.82
AT1G29930.1	Thale cress	plastid	93.98	46.82
GSMUA_Achr4P33040_001	Banana	plastid, unclear	92.48	46.59
GSMUA_AchrUn_...	Banana	plastid	75.94	43.72
GSMUA_Achr1P08770_001	Banana	plastid, unclear	75.94	41.91
CDX84315	Canola	plastid	95.49	38.6
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	33.83	30.82
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	16.54	23.16
GSMUA_Achr6P20660_001	Banana	mitochondrion	34.59	22.44
GSMUA_Achr6P12670_001	Banana	plasma membrane	45.11	21.51
GSMUA_Achr10P...	Banana	unclear	23.31	20.81
GSMUA_Achr3P02780_001	Banana	plastid	45.11	20.69
GSMUA_Achr2P06350_001	Banana	unclear	36.84	20.33
GSMUA_Achr6P31940_001	Banana	plastid	36.84	20.33
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	36.84	19.68
GSMUA_Achr10P...	Banana	plastid	42.11	19.44
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	35.34	19.18
GSMUA_Achr9P27480_001	Banana	mitochondrion	45.11	18.63
GSMUA_Achr9P02810_001	Banana	plastid	33.83	18.52
GSMUA_Achr7P13020_001	Banana	plastid	37.59	18.38
GSMUA_Achr3P04110_001	Banana	plastid	36.84	17.88
GSMUA_Achr2P14960_001	Banana	plastid	32.33	17.13
GSMUA_Achr4P24090_001	Banana	unclear	30.08	15.87
GSMUA_Achr9P18200_001	Banana	plastid	7.52	7.3

Protein Annotations

Gene3D:1.10.3460.10	MapMan:35.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr10G15270_001
EnsemblPlants:GSMUA_Achr10P15270_001	EnsemblPlants:GSMUA_Achr10T15270_001	InterPro:IPR023329	UniProt:M0RIF3	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF25	SUPFAM:SSF103511	UniParc:UPI000294F27C	:	:	:

Description

Chlorophyll a-b binding protein 40, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G15270_001]

Coordinates

chr10:+:23279045..23280040

Molecular Weight (calculated)

14158.3 Da

IEP (calculated)

6.506

GRAVY (calculated)

0.386

Length

133 amino acids

Sequence
(BLAST)

001: MLGALGCVFP ELLARNGVKF GEAVWFKAGA QIFSEGGLDY LGNPSLIHAQ SILAIWACQV ILMGAVEGYR IAGGPLGEVK EIKNGRLAMF SMFGFFVQAI
101: VTGKGPLENL ADHLADPVNN NAWAYATNFV PGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.