Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26347 | Canola | plastid | 80.0 | 29.8 |
| Solyc10g007690.2.1 | Tomato | plastid | 85.26 | 29.67 |
| PGSC0003DMT400020100 | Potato | plastid | 85.26 | 29.67 |
| VIT_15s0024g00040.t01 | Wine grape | plastid | 85.26 | 29.56 |
| Solyc12g011280.1.1 | Tomato | plastid | 84.21 | 29.3 |
| PGSC0003DMT400054836 | Potato | plastid | 84.21 | 29.3 |
| GSMUA_Achr3P04110_001 | Banana | plastid | 83.16 | 28.83 |
| CDY15020 | Canola | plastid | 82.11 | 28.78 |
| KRH14048 | Soybean | nucleus, plastid | 83.16 | 28.62 |
| KRH74072 | Soybean | mitochondrion, nucleus, plastid | 83.16 | 28.62 |
| Bra031427.1-P | Field mustard | plastid | 82.11 | 28.57 |
| AT1G61520.1 | Thale cress | plastid | 82.11 | 28.57 |
| CDY03835 | Canola | plastid | 82.11 | 28.57 |
| CDY47581 | Canola | plastid | 82.11 | 28.57 |
| CDY57375 | Canola | plastid | 81.05 | 28.41 |
| CDY12903 | Canola | plastid | 81.05 | 28.41 |
| Bra027083.1-P | Field mustard | plastid | 81.05 | 28.41 |
| KXG20345 | Sorghum | plastid | 78.95 | 28.3 |
| Zm00001d046786_P001 | Maize | plastid | 76.84 | 27.34 |
| TraesCS6D01G152700.1 | Wheat | golgi | 76.84 | 27.14 |
| TraesCS6B01G191500.1 | Wheat | plastid | 76.84 | 27.14 |
| TraesCS6A01G159800.1 | Wheat | plastid | 76.84 | 27.14 |
| Os02t0197600-01 | Rice | plastid | 75.79 | 26.77 |
| Bra038584.1-P | Field mustard | plastid | 80.0 | 26.48 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, plastid | 23.16 | 16.54 |
| GSMUA_Achr5P09230_001 | Banana | cytosol, extracellular, plastid | 23.16 | 16.54 |
| GSMUA_Achr9P01470_001 | Banana | endoplasmic reticulum | 36.84 | 14.06 |
| GSMUA_Achr7P13020_001 | Banana | plastid | 36.84 | 12.87 |
| GSMUA_Achr6P20660_001 | Banana | mitochondrion | 27.37 | 12.68 |
| GSMUA_Achr2P14960_001 | Banana | plastid | 32.63 | 12.35 |
| GSMUA_Achr4P24090_001 | Banana | unclear | 32.63 | 12.3 |
| GSMUA_Achr10P... | Banana | unclear | 18.95 | 12.08 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 17.89 | 11.64 |
| GSMUA_Achr6P12670_001 | Banana | plasma membrane | 31.58 | 10.75 |
| GSMUA_Achr4P33040_001 | Banana | plastid, unclear | 29.47 | 10.61 |
| GSMUA_AchrUn_... | Banana | plastid | 25.26 | 10.39 |
| GSMUA_Achr4P07890_001 | Banana | plastid | 16.84 | 10.06 |
| GSMUA_Achr3P02780_001 | Banana | plastid | 30.53 | 10.0 |
| GSMUA_Achr2P09300_001 | Banana | plasma membrane, plastid, unclear | 27.37 | 9.74 |
| GSMUA_Achr10P... | Banana | plastid | 29.47 | 9.72 |
| GSMUA_Achr2P06350_001 | Banana | unclear | 24.21 | 9.54 |
| GSMUA_Achr6P31940_001 | Banana | plastid | 24.21 | 9.54 |
| GSMUA_Achr1P08770_001 | Banana | plastid, unclear | 23.16 | 9.13 |
| GSMUA_Achr9P18200_001 | Banana | plastid | 12.63 | 8.76 |
| GSMUA_Achr9P27480_001 | Banana | mitochondrion | 25.26 | 7.45 |
| GSMUA_Achr8P03720_001 | Banana | plasma membrane, plastid, unclear | 17.89 | 6.94 |
| GSMUA_Achr9P02810_001 | Banana | plastid | 16.84 | 6.58 |
Protein Annotations
| Gene3D:1.10.3460.10 | MapMan:35.1 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006091 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009409 |
| GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009644 | GO:GO:0009645 | GO:GO:0009719 | GO:GO:0009735 |
| GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009987 | GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0019904 | EnsemblPlantsGene:GSMUA_Achr10G31440_001 |
| EnsemblPlants:GSMUA_Achr10P31440_001 | EnsemblPlants:GSMUA_Achr10T31440_001 | InterPro:IPR023329 | UniProt:M0RN18 | PFAM:PF00504 | PANTHER:PTHR21649 |
| PANTHER:PTHR21649:SF14 | SUPFAM:SSF103511 | UniParc:UPI000295302D | : | : | : |
Description
Chlorophyll a-b binding protein 8, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G31440_001]
Coordinates
chr10:+:33551062..33551349
Molecular Weight (calculated)
10198.4 Da
IEP (calculated)
5.787
GRAVY (calculated)
-0.080
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MLGAAGEIAP ETLGKLGMRP AETALPWFKT GAMPPAGTCV YWADPYTLFV LEMALMGFAE HRRFQDWAKP GTMGKQYFLG LEKGLGGSGD PAYPG
001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH
Arabidopsis Description
LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.