Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 10
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
mitochondrion: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14048 | Soybean | nucleus, plastid | 99.64 | 99.64 |
| VIT_15s0024g00040.t01 | Wine grape | plastid | 88.41 | 89.05 |
| PGSC0003DMT400054836 | Potato | plastid | 86.59 | 87.55 |
| PGSC0003DMT400020100 | Potato | plastid | 86.23 | 87.18 |
| Solyc12g011280.1.1 | Tomato | plastid | 86.23 | 87.18 |
| Solyc10g007690.2.1 | Tomato | plastid | 85.87 | 86.81 |
| AT1G61520.1 | Thale cress | plastid | 84.78 | 85.71 |
| CDY12903 | Canola | plastid | 83.7 | 85.24 |
| Bra027083.1-P | Field mustard | plastid | 83.33 | 84.87 |
| CDY57375 | Canola | plastid | 83.33 | 84.87 |
| CDY15020 | Canola | plastid | 82.97 | 84.5 |
| CDY47581 | Canola | plastid | 82.61 | 83.52 |
| CDY03835 | Canola | plastid | 82.61 | 83.52 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, plastid | 28.62 | 83.16 |
| Bra031427.1-P | Field mustard | plastid | 82.25 | 83.15 |
| CDY26347 | Canola | plastid | 75.72 | 81.96 |
| Zm00001d046786_P001 | Maize | plastid | 78.62 | 81.27 |
| KXG20345 | Sorghum | plastid | 75.72 | 78.87 |
| Os02t0197600-01 | Rice | plastid | 76.81 | 78.81 |
| TraesCS6D01G152700.1 | Wheat | golgi | 73.19 | 75.09 |
| TraesCS6B01G191500.1 | Wheat | plastid | 73.19 | 75.09 |
| TraesCS6A01G159800.1 | Wheat | plastid | 73.19 | 75.09 |
| Bra038584.1-P | Field mustard | plastid | 72.83 | 70.03 |
| KRH12566 | Soybean | plastid | 38.77 | 41.15 |
| KRH37524 | Soybean | plastid | 38.41 | 40.77 |
| KRH54568 | Soybean | nucleus, plastid | 36.96 | 40.48 |
| KRH63318 | Soybean | plastid | 36.23 | 39.68 |
| KRH06319 | Soybean | nucleus, plastid | 38.77 | 39.63 |
| KRH08634 | Soybean | endoplasmic reticulum | 17.75 | 39.52 |
| KRH47742 | Soybean | nucleus | 37.68 | 36.88 |
| KRH70044 | Soybean | mitochondrion, nucleus, plastid | 32.25 | 36.18 |
| KRH08384 | Soybean | nucleus, plastid | 32.25 | 36.18 |
| KRH51989 | Soybean | nucleus | 36.96 | 35.79 |
| KRH08672 | Soybean | mitochondrion, nucleus, plastid | 33.7 | 35.23 |
| KRH08669 | Soybean | nucleus, plastid | 33.7 | 35.23 |
| KRH08676 | Soybean | nucleus, plastid | 33.7 | 35.23 |
| KRH22164 | Soybean | nucleus, plastid | 34.06 | 35.21 |
| KRH27171 | Soybean | mitochondrion, nucleus, plastid | 34.06 | 35.07 |
| KRH42317 | Soybean | mitochondrion, nucleus, plastid | 33.33 | 34.98 |
| KRH58441 | Soybean | mitochondrion, plastid | 32.61 | 34.22 |
| KRH70280 | Soybean | plastid | 30.8 | 34.14 |
| KRH74003 | Soybean | nucleus, plastid | 32.61 | 33.96 |
| KRH14122 | Soybean | nucleus, plastid | 32.61 | 33.96 |
| KRH68993 | Soybean | plastid | 37.68 | 33.77 |
| KRH09238 | Soybean | mitochondrion, nucleus, plastid | 32.97 | 31.49 |
| KRH34336 | Soybean | plastid | 32.61 | 31.36 |
| KRH58296 | Soybean | plastid | 27.54 | 31.28 |
| KRH38736 | Soybean | nucleus, plastid | 32.97 | 31.27 |
| KRG92462 | Soybean | nucleus, plastid | 32.61 | 31.25 |
| KRH10515 | Soybean | mitochondrion, nucleus, plastid | 28.26 | 30.0 |
| KRH42185 | Soybean | mitochondrion, nucleus, plastid | 27.9 | 29.84 |
| KRH43915 | Soybean | mitochondrion, nucleus, plastid | 27.9 | 29.5 |
| KRH75874 | Soybean | mitochondrion, nucleus, plastid | 30.07 | 28.62 |
| KRH06016 | Soybean | plastid | 34.06 | 28.31 |
| KRH65776 | Soybean | nucleus, plastid | 29.71 | 28.28 |
| KRH17548 | Soybean | cytosol, peroxisome, plastid | 19.57 | 26.73 |
| KRG97750 | Soybean | plastid | 26.81 | 26.62 |
| KRH31130 | Soybean | nucleus, plastid | 27.17 | 26.6 |
| KRH61286 | Soybean | mitochondrion | 21.01 | 26.48 |
| KRH58809 | Soybean | mitochondrion | 22.83 | 19.87 |
Protein Annotations
| MapMan:1.1.4.1.3 | Gene3D:1.10.3460.10 | EMBL:ACUP02001294 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf |
| EnsemblPlantsGene:GLYMA_02G309500 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009416 |
| GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 |
| GO:GO:0009628 | GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010287 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 |
| GO:GO:0031409 | UniProt:I1JJU8 | InterPro:IPR023329 | EnsemblPlants:KRH74072 | ProteinID:KRH74072 | ProteinID:KRH74072.1 |
| PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF14 | SUPFAM:SSF103511 | UniParc:UPI000233777A | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:-:48295104..48297398
Molecular Weight (calculated)
29780.8 Da
IEP (calculated)
9.079
GRAVY (calculated)
-0.067
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAQALVSSS SLTFSAEAAR QSLGPRSLQS PFGFSRKASF LVKAAATPPV KQGSDRPLWF ASKQSLSYLD GSLPGDYGFD PLGLSDPEGT GGFIEPKWLA
101: YGEIINGRYA MLGAVGAIAP EILGKAGLIP QETALPWFRT GVFPPAGTYN YWADSYTLFV FEMALMGFAE HRRFQDWAKP GSMGKQYFLG LEKGLGGSGE
201: PAYPGGPFFN PLGFGKDEKS LKDLKLKEVK NGRLAMLAIL GYFVQALVTG VGPYQNLLDH LADPVHNNIL TSLKFH
101: YGEIINGRYA MLGAVGAIAP EILGKAGLIP QETALPWFRT GVFPPAGTYN YWADSYTLFV FEMALMGFAE HRRFQDWAKP GSMGKQYFLG LEKGLGGSGE
201: PAYPGGPFFN PLGFGKDEKS LKDLKLKEVK NGRLAMLAIL GYFVQALVTG VGPYQNLLDH LADPVHNNIL TSLKFH
001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH
Arabidopsis Description
LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.