CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
plastid 3
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037285	Potato	extracellular, vacuole	52.84	95.51
KRH06319	Soybean	nucleus, plastid	88.65	92.59
Solyc10g006230.2.1	Tomato	plastid	80.14	83.7
GSMUA_Achr6P20660_001	Banana	mitochondrion	59.57	81.95
VIT_01s0010g03620.t01	Wine grape	plastid	78.37	81.55
CDY43936	Canola	plastid	73.76	81.25
AT3G61470.1	Thale cress	plastid	73.4	80.54
Bra014433.1-P	Field mustard	plastid	73.05	80.47
CDX89120	Canola	plastid	73.05	80.47
TraesCS2D01G200700.1	Wheat	plastid	72.69	80.39
TraesCS2B01G220100.1	Wheat	golgi, plastid	72.34	80.0
Os07t0577600-01	Rice	plastid	74.47	79.85
TraesCS2A01G187200.1	Wheat	plastid	72.34	79.38
Bra003451.1-P	Field mustard	plastid	72.34	78.76
Zm00001d006663_P001	Maize	plastid	72.34	78.46
CDY51572	Canola	plastid	71.99	78.38
KXG36552	Sorghum	plastid	73.05	78.33
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	68.44	77.51
Zm00001d021906_P001	Maize	plastid	72.69	75.93
KRH68993	Soybean	plastid	78.37	71.75
HORVU2Hr1G036960.4	Barley	plastid	70.92	70.92
AT5G28450.1	Thale cress	plastid	39.36	64.16
KRH12566	Soybean	plastid	52.48	56.92
KRH37524	Soybean	plastid	52.48	56.92
KRH63318	Soybean	plastid	41.49	46.43
KRH54568	Soybean	nucleus, plastid	41.49	46.43
KRH08634	Soybean	endoplasmic reticulum	17.02	38.71
KRH14048	Soybean	nucleus, plastid	36.88	37.68
KRH74072	Soybean	mitochondrion, nucleus, plastid	36.88	37.68
KRH08384	Soybean	nucleus, plastid	32.62	37.4
KRH70044	Soybean	mitochondrion, nucleus, plastid	32.62	37.4
KRH51989	Soybean	nucleus	36.52	36.14
KRH58296	Soybean	plastid	27.66	32.1
KRH58441	Soybean	mitochondrion, plastid	29.79	31.94
KRH08669	Soybean	nucleus, plastid	29.79	31.82
KRH42317	Soybean	mitochondrion, nucleus, plastid	29.43	31.56
KRH08676	Soybean	nucleus, plastid	29.43	31.44
KRH08672	Soybean	mitochondrion, nucleus, plastid	29.43	31.44
KRH42185	Soybean	mitochondrion, nucleus, plastid	28.37	31.01
KRH10515	Soybean	mitochondrion, nucleus, plastid	28.37	30.77
KRH43915	Soybean	mitochondrion, nucleus, plastid	28.37	30.65
KRH74003	Soybean	nucleus, plastid	28.72	30.57
KRH14122	Soybean	nucleus, plastid	28.72	30.57
KRH70280	Soybean	plastid	26.24	29.72
KRH65776	Soybean	nucleus, plastid	30.5	29.66
KRH75874	Soybean	mitochondrion, nucleus, plastid	30.5	29.66
KRH34336	Soybean	plastid	29.79	29.27
KRH61286	Soybean	mitochondrion	22.7	29.22
KRH22164	Soybean	nucleus, plastid	27.3	28.84
KRG92462	Soybean	nucleus, plastid	29.43	28.82
KRG97750	Soybean	plastid	28.37	28.78
KRH27171	Soybean	mitochondrion, nucleus, plastid	27.3	28.73
KRH09238	Soybean	mitochondrion, nucleus, plastid	29.08	28.37
KRH38736	Soybean	nucleus, plastid	29.08	28.18
KRH31130	Soybean	nucleus, plastid	28.01	28.01
KRH17548	Soybean	cytosol, peroxisome, plastid	17.38	24.26
KRH06016	Soybean	plastid	28.01	23.8
KRH58809	Soybean	mitochondrion	19.15	17.03

Protein Annotations

MapMan:1.1.4.1.2	Gene3D:1.10.3460.10	EntrezGene:100784089	EMBL:ACUP02004162	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_07G047600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	UniProt:I1KHL4	InterPro:IPR023329	EnsemblPlants:KRH47742	ProteinID:KRH47742
ProteinID:KRH47742.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF57	SUPFAM:SSF103511	UniParc:UPI00023C7D13

Description

hypothetical protein

Coordinates

chr7:-:3991238..3993030

Molecular Weight (calculated)

30854.2 Da

IEP (calculated)

6.355

GRAVY (calculated)

0.095

Length

282 amino acids

Sequence
(BLAST)

001: MILSLVESFF EINLVLIIKL YVKINHEIAC SSQKNGSLLG STKASFLSGR KLKVNSFTAP VGARSSTTVC AVAEPDRPLW FPGSTPPPWL DGSLPGDFGF
101: DPLGLGSDPE SLRWNVQAEL VHCRWAMLGA AGIFIPEFLT KIGILNTPSW YTAGELEYFT DTTTLFVVEL FFIGWAEGRR WADIIKPGCV NTDPIFPNNK
201: LTGTDVGYPG GLWFDPLGWG SGSPEKIKEL RTKEIKNGRL AMLAVMGAWF QHIYTGTGPI DNLFAHLADP GHATIFAAFT PK

Best Arabidopsis Sequence Match ( AT3G61470.1 )
(BLAST)

001: MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK

Arabidopsis Description

LHCA2Photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SYW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.