CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51989	Soybean	nucleus	74.43	57.19
TraesCS6B01G312900.1	Wheat	plastid	31.96	48.28
AT1G45474.2	Thale cress	mitochondrion	51.6	44.14
VIT_18s0001g10550.t01	Wine grape	plastid	52.05	43.18
Solyc07g022900.2.1	Tomato	plastid	51.14	42.75
PGSC0003DMT400011381	Potato	plastid	51.14	42.11
Bra014048.1-P	Field mustard	mitochondrion, plastid	49.32	41.86
CDY17055	Canola	mitochondrion, plastid	49.32	41.86
CDY43213	Canola	mitochondrion, plastid	49.32	41.86
TraesCS6B01G350500.1	Wheat	plastid	48.4	41.25
TraesCS6D01G299200.1	Wheat	plastid	47.49	40.94
TraesCS6A01G319700.1	Wheat	plastid	47.49	40.94
EES07574	Sorghum	plastid	48.4	39.85
Os02t0764500-01	Rice	plastid	47.49	39.85
GSMUA_Achr7P13020_001	Banana	plastid	48.4	38.97
Zm00001d018157_P001	Maize	plastid	46.58	37.92
KRH54568	Soybean	nucleus, plastid	30.14	26.19
KRH63318	Soybean	plastid	29.68	25.79
KRH06319	Soybean	nucleus, plastid	31.51	25.56
KRH12566	Soybean	plastid	30.14	25.38
KRH37524	Soybean	plastid	29.22	24.62
KRH58296	Soybean	plastid	26.94	24.28
KRH43915	Soybean	mitochondrion, nucleus, plastid	28.77	24.14
KRH10515	Soybean	mitochondrion, nucleus, plastid	28.31	23.85
KRH42185	Soybean	mitochondrion, nucleus, plastid	27.85	23.64
KRH47742	Soybean	nucleus	29.22	22.7
KRH68993	Soybean	plastid	29.68	21.1
KRH74072	Soybean	mitochondrion, nucleus, plastid	26.48	21.01
KRH14048	Soybean	nucleus, plastid	26.48	21.01
KRH08384	Soybean	nucleus, plastid	21.0	18.7
KRH70044	Soybean	mitochondrion, nucleus, plastid	21.0	18.7
KRH14122	Soybean	nucleus, plastid	19.18	15.85
KRH70280	Soybean	plastid	17.81	15.66
KRH08672	Soybean	mitochondrion, nucleus, plastid	18.72	15.53
KRH08676	Soybean	nucleus, plastid	18.72	15.53
KRH08669	Soybean	nucleus, plastid	18.72	15.53
KRH74003	Soybean	nucleus, plastid	18.72	15.47
KRH22164	Soybean	nucleus, plastid	18.72	15.36
KRH58441	Soybean	mitochondrion, plastid	18.26	15.21
KRH42317	Soybean	mitochondrion, nucleus, plastid	18.26	15.21
KRH27171	Soybean	mitochondrion, nucleus, plastid	18.26	14.93
KRG97750	Soybean	plastid	18.72	14.75
KRH65776	Soybean	nucleus, plastid	19.18	14.48
KRH75874	Soybean	mitochondrion, nucleus, plastid	19.18	14.48
KRH31130	Soybean	nucleus, plastid	17.81	13.83
KRH06016	Soybean	plastid	19.63	12.95
KRH34336	Soybean	plastid	16.89	12.89
KRG92462	Soybean	nucleus, plastid	16.89	12.85
KRH09238	Soybean	mitochondrion, nucleus, plastid	16.89	12.8
KRH38736	Soybean	nucleus, plastid	16.89	12.71
KRH17548	Soybean	cytosol, peroxisome, plastid	10.5	11.39
KRH08634	Soybean	endoplasmic reticulum	5.94	10.48
KRH58809	Soybean	mitochondrion	10.05	6.94

Protein Annotations

Gene3D:1.10.3460.10	MapMan:35.1	UniProt:A0A0R0K3H1	EMBL:ACUP02002160	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_04G038700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	EnsemblPlants:KRH61286	ProteinID:KRH61286	ProteinID:KRH61286.1
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF23	SUPFAM:SSF103511	UniParc:UPI0006EDB018	:

Description

hypothetical protein

Coordinates

chr4:-:3076798..3078154

Molecular Weight (calculated)

24299.6 Da

IEP (calculated)

9.570

GRAVY (calculated)

0.287

Length

219 amino acids

Sequence
(BLAST)

001: MAVAIGRSFS IQPRSFFNSK SLDRASPAGR LSWLGHAAAA ATPYYRQTCV AAQHLAGDFG FDPLGLAEDP ASLRWYVQAE LVHCRFAMLG VFGILVTDLL
101: RVTGINKIPV WFEAGAVKYD FANTKTLFLV QLLLMGFVET KRYMDFVSPG SQAKEGSFFG LEASLKGLEP GKHTLCILLN NGLIVTGHFD FTILIFRPLR
201: VLLFSSRKYS MNYVAWAYP

Best Arabidopsis Sequence Match ( AT1G45474.1 )
(BLAST)

001: MAVVLRGGIT GGFLHHRRDA SSVITRRISS VKAAGGGINP TVAVERATWL PGLNPPPYLD GNLAGDYGFD PLGLGEDPES LKWYVQAELV HSRFAMLGVA
101: GILFTDLLRT TGIRNLPVWY EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG YPGGPLLNPL GLAKDVQNAH
201: DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS NPWHKTIIQT LFTSTS

Arabidopsis Description

LHCA5Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C639]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.