Factsheet for Solyc07g022900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 15248779
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 15248779 doi

S Storf, EJ Stauber, M Hippler, VH Schmid

Institut für Allgemeine Botanik, Johannes Gutenberg-Universität Mainz, Müllerweg 6, 55099 Mainz, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011381	Potato	plastid	75.57	74.44
VIT_18s0001g10550.t01	Wine grape	plastid	73.28	72.73
AT1G45474.2	Thale cress	mitochondrion	68.7	70.31
Bra014048.1-P	Field mustard	mitochondrion, plastid	69.08	70.16
CDY17055	Canola	mitochondrion, plastid	68.7	69.77
CDY43213	Canola	mitochondrion, plastid	68.32	69.38
KRH51989	Soybean	nucleus	72.14	66.32
TraesCS6D01G299200.1	Wheat	plastid	62.6	64.57
TraesCS6A01G319700.1	Wheat	plastid	61.83	63.78
GSMUA_Achr7P13020_001	Banana	plastid	66.03	63.6
Os02t0764500-01	Rice	plastid	63.36	63.6
EES07574	Sorghum	plastid	64.5	63.53
TraesCS6B01G350500.1	Wheat	plastid	61.83	63.03
Zm00001d018157_P001	Maize	plastid	63.36	61.71
TraesCS6B01G312900.1	Wheat	plastid	30.92	55.86
KRH61286	Soybean	mitochondrion	42.75	51.14
Solyc08g067320.1.1	Tomato	plastid	14.89	42.86
Solyc06g069730.2.1	Tomato	plastid	40.08	42.0
Solyc03g115900.2.1	Tomato	plastid	39.69	41.43
Solyc10g006230.2.1	Tomato	plastid	41.22	40.0
Solyc12g009200.1.1	Tomato	nucleus, plastid	38.17	38.46
Solyc10g007690.2.1	Tomato	plastid	39.31	37.73
Solyc12g011280.1.1	Tomato	plastid	38.17	36.63
Solyc01g105050.2.1	Tomato	plastid	32.44	33.2
Solyc05g056070.2.1	Tomato	plastid	30.92	32.93
Solyc01g105030.2.1	Tomato	plastid	32.06	32.81
Solyc05g056050.2.1	Tomato	plastid	30.53	32.52
Solyc03g005780.1.1	Tomato	plastid	29.77	29.21
Solyc02g070940.1.1	Tomato	plastid	29.39	29.06
Solyc02g070950.1.1	Tomato	plastid	29.39	29.06
Solyc02g070980.1.1	Tomato	nucleus, plastid	29.39	29.06
Solyc02g071030.1.1	Tomato	plastid	29.39	29.06
Solyc02g071010.1.1	Tomato	plastid	29.39	29.06
Solyc02g070990.1.1	Tomato	plastid	29.39	29.06
Solyc02g070970.1.1	Tomato	plastid	29.39	29.06
Solyc07g063600.2.1	Tomato	nucleus	29.01	29.01
Solyc03g005770.1.1	Tomato	nucleus	29.39	28.84
Solyc03g005760.1.1	Tomato	nucleus	29.01	28.46
Solyc02g071000.1.1	Tomato	nucleus, plastid	28.63	28.3
Solyc09g014520.2.1	Tomato	plastid	30.53	28.07
Solyc12g011450.1.1	Tomato	plastid	28.24	27.92
Solyc06g063370.2.1	Tomato	plastid	29.77	27.27
Solyc07g047850.2.1	Tomato	plastid	27.1	26.79
Solyc12g006140.1.1	Tomato	plastid	27.1	26.79
Solyc08g067330.1.1	Tomato	plastid	8.78	23.47
Solyc04g082920.2.1	Tomato	plastid	15.27	18.35

Protein Annotations

MapMan:1.1.4.1.5	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009644	GO:GO:0009645	GO:GO:0009765	GO:GO:0009768
GO:GO:0009782	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	GO:GO:0042803
InterPro:IPR023329	UniProt:K4CD46	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF23	SUPFAM:SSF103511
EnsemblPlantsGene:Solyc07g022900.2	EnsemblPlants:Solyc07g022900.2.1	UniParc:UPI000276ABE3	SEG:seg	:	:

Description

Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G45474) UniProtKB/Swiss-Prot;Acc:Q9C639]

Coordinates

chr7:+:23224809..23226448

Molecular Weight (calculated)

28518.7 Da

IEP (calculated)

9.689

GRAVY (calculated)

0.022

Length

262 amino acids

Sequence
(BLAST)

001: MEIAVGRSFQ VLTLLSGSSF HGKSIRRTCV KGFNSTRARK GHSLTPLAQA HQRPTWLPGL DPPPHLDGTL AGDFGFDPLG LGEDPESLKW YVQAELVHAR
101: FAMAGVAGIL LTDLLRVTRI RDLPVWYEAG ATKFNFASTT TLLIIQLLLM GFVETKRYMD FLHPGSQAKP GSFFGLEAAL EGLEPGYPGG PLLNPLGIGK
201: DIKNAKDWKL KEIKNGRLAM VAMLGIFVQA SVTHVGPIDN LIDHLSNPWH KTILQTIAAS SS

Best Arabidopsis Sequence Match ( AT1G45474.2 )
(BLAST)

001: MAVVLRGGIT GGFLHHRRDA SSVITRRISS VKAAGGGINP TVAVERATWL PGLNPPPYLD GNLAGDYGFD PLGLGEDPES LKWYVQAELV HSRFAMLGVA
101: GILFTDLLRT TGIRNLPVWY EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG YPGGPLLNPL GLAKDVQNAH
201: DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS NPWHKTIIQT LFTSTS

Arabidopsis Description

LHCA5Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C639]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.