Factsheet for Solyc08g067320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G086800.1	Wheat	cytosol	95.6	88.78
KRH08634	Soybean	endoplasmic reticulum	91.21	66.94
CDY17250	Canola	mitochondrion, plastid	87.91	49.08
Solyc03g005770.1.1	Tomato	nucleus	97.8	33.33
Solyc03g005760.1.1	Tomato	nucleus	97.8	33.33
Solyc02g071030.1.1	Tomato	plastid	96.7	33.21
Solyc02g071010.1.1	Tomato	plastid	96.7	33.21
Solyc02g070990.1.1	Tomato	plastid	96.7	33.21
Solyc02g070980.1.1	Tomato	nucleus, plastid	96.7	33.21
Solyc02g070970.1.1	Tomato	plastid	96.7	33.21
Solyc02g070950.1.1	Tomato	plastid	96.7	33.21
Solyc02g070940.1.1	Tomato	plastid	96.7	33.21
Solyc03g005780.1.1	Tomato	plastid	95.6	32.58
Solyc02g071000.1.1	Tomato	nucleus, plastid	94.51	32.45
Solyc12g006140.1.1	Tomato	plastid	83.52	28.68
Solyc07g047850.2.1	Tomato	plastid	82.42	28.3
Solyc12g011450.1.1	Tomato	plastid	76.92	26.42
Solyc07g063600.2.1	Tomato	nucleus	75.82	26.34
Solyc06g063370.2.1	Tomato	plastid	58.24	18.53
Solyc12g009200.1.1	Tomato	nucleus, plastid	50.55	17.69
Solyc05g056050.2.1	Tomato	plastid	46.15	17.07
Solyc05g056070.2.1	Tomato	plastid	46.15	17.07
Solyc10g007690.2.1	Tomato	plastid	49.45	16.48
Solyc12g011280.1.1	Tomato	plastid	48.35	16.12
Solyc06g069730.2.1	Tomato	plastid	43.96	16.0
Solyc10g006230.2.1	Tomato	plastid	47.25	15.93
Solyc07g022900.2.1	Tomato	plastid	42.86	14.89
Solyc03g115900.2.1	Tomato	plastid	40.66	14.74
Solyc09g014520.2.1	Tomato	plastid	43.96	14.04
Solyc01g105030.2.1	Tomato	plastid	36.26	12.89
Solyc01g105050.2.1	Tomato	plastid	35.16	12.5
Solyc04g082920.2.1	Tomato	plastid	1.1	0.46
Solyc08g067330.1.1	Tomato	plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.3460.10	MapMan:35.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329
UniProt:K4CLV8	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	SUPFAM:SSF103511	EnsemblPlantsGene:Solyc08g067320.1
EnsemblPlants:Solyc08g067320.1.1	UniParc:UPI000276C27A	:	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4CLV8]

Coordinates

chr8:-:56387815..56388090

Molecular Weight (calculated)

9598.5 Da

IEP (calculated)

4.644

GRAVY (calculated)

0.145

Length

91 amino acids

Sequence
(BLAST)

1: MGAVEGHRIA GGPLGEVVDP LYPGGSFDPL GLAELKVEEI KNGRLAMFSM FGFFVQAIVT GKGPLENLAD HIADPVNNNA WAFATNFVPG K

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.