Factsheet for Solyc12g011280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020100	Potato	plastid	98.17	98.17
Solyc10g007690.2.1	Tomato	plastid	90.84	90.84
AT1G61520.1	Thale cress	plastid	86.81	86.81
KRH74072	Soybean	mitochondrion, nucleus, plastid	87.18	86.23
VIT_15s0024g00040.t01	Wine grape	plastid	86.45	86.13
CDY12903	Canola	plastid	85.35	85.98
KRH14048	Soybean	nucleus, plastid	86.81	85.87
Bra027083.1-P	Field mustard	plastid	84.98	85.61
CDY57375	Canola	plastid	84.98	85.61
CDY15020	Canola	plastid	84.62	85.24
Bra031427.1-P	Field mustard	plastid	84.25	84.25
CDY03835	Canola	plastid	84.25	84.25
CDY47581	Canola	plastid	84.25	84.25
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	29.3	84.21
Zm00001d046786_P001	Maize	plastid	81.32	83.15
CDY26347	Canola	plastid	77.66	83.14
KXG20345	Sorghum	plastid	79.12	81.51
Os02t0197600-01	Rice	plastid	76.19	77.32
TraesCS6A01G159800.1	Wheat	plastid	75.09	76.21
TraesCS6B01G191500.1	Wheat	plastid	75.09	76.21
TraesCS6D01G152700.1	Wheat	golgi	75.09	76.21
Bra038584.1-P	Field mustard	plastid	75.46	71.78
Solyc08g067320.1.1	Tomato	plastid	16.12	48.35
Solyc12g009200.1.1	Tomato	nucleus, plastid	38.46	40.38
Solyc06g069730.2.1	Tomato	plastid	36.26	39.6
Solyc03g115900.2.1	Tomato	plastid	35.9	39.04
Solyc07g022900.2.1	Tomato	plastid	36.63	38.17
Solyc10g006230.2.1	Tomato	plastid	37.73	38.15
Solyc02g071000.1.1	Tomato	nucleus, plastid	34.07	35.09
Solyc03g005780.1.1	Tomato	plastid	34.07	34.83
Solyc02g070990.1.1	Tomato	plastid	33.7	34.72
Solyc05g056050.2.1	Tomato	plastid	31.14	34.55
Solyc05g056070.2.1	Tomato	plastid	31.14	34.55
Solyc03g005760.1.1	Tomato	nucleus	33.7	34.46
Solyc02g070980.1.1	Tomato	nucleus, plastid	33.33	34.34
Solyc02g070970.1.1	Tomato	plastid	33.33	34.34
Solyc02g070950.1.1	Tomato	plastid	33.33	34.34
Solyc02g071030.1.1	Tomato	plastid	33.33	34.34
Solyc02g070940.1.1	Tomato	plastid	33.33	34.34
Solyc02g071010.1.1	Tomato	plastid	33.33	34.34
Solyc03g005770.1.1	Tomato	nucleus	33.33	34.08
Solyc07g063600.2.1	Tomato	nucleus	32.6	33.97
Solyc12g011450.1.1	Tomato	plastid	32.97	33.96
Solyc12g006140.1.1	Tomato	plastid	32.23	33.21
Solyc08g067330.1.1	Tomato	plastid	11.72	32.65
Solyc06g063370.2.1	Tomato	plastid	34.07	32.52
Solyc07g047850.2.1	Tomato	plastid	31.5	32.45
Solyc01g105030.2.1	Tomato	plastid	28.94	30.86
Solyc01g105050.2.1	Tomato	plastid	28.57	30.47
Solyc09g014520.2.1	Tomato	plastid	28.94	27.72
Solyc04g082920.2.1	Tomato	plastid	15.75	19.72

Protein Annotations

MapMan:1.1.4.1.3	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329
UniProt:K4DCL4	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF14	SUPFAM:SSF103511	EnsemblPlantsGene:Solyc12g011280.1
EnsemblPlants:Solyc12g011280.1.1	UniParc:UPI000276A198	SEG:seg	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4DCL4]

Coordinates

chr12:-:4139454..4140793

Molecular Weight (calculated)

29279.3 Da

IEP (calculated)

9.107

GRAVY (calculated)

-0.061

Length

273 amino acids

Sequence
(BLAST)

001: MATQALISSS SIASSTEAAR QILGGRPFQS QIKKASFVVR ATATPPVKQG ANRPLWFASK QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPKWLAYGE
101: VINGRFAMLG VVGAIAPEIL GKAGLIPPET ALPWFQTGVI PPAGTYNYWA DGYTLFVLEM ALMGFAEHRR FQDWAKPGSM GKQYFLGLEK GLGGSGDPAY
201: PGGPFFNPLG FGKDEKSMKD LKLKEIKNGR LAMLGILGYF IQGLVTGVGP YQNLLDHLAD PANNNVLTSL KFH

Best Arabidopsis Sequence Match ( AT1G61520.1 )
(BLAST)

001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Arabidopsis Description

LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.