Factsheet for TraesCS6B01G191500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 16595579
plastid: 22160430
plastid: 22736107

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G159800.1	Wheat	plastid	99.63	99.63
TraesCS6D01G152700.1	Wheat	golgi	99.63	99.63
Os02t0197600-01	Rice	plastid	87.36	87.36
Zm00001d046786_P001	Maize	plastid	81.78	82.4
KXG20345	Sorghum	plastid	79.55	80.75
VIT_15s0024g00040.t01	Wine grape	plastid	78.81	77.37
CDY26347	Canola	plastid	73.23	77.25
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	27.14	76.84
PGSC0003DMT400054836	Potato	plastid	77.32	76.19
GSMUA_Achr3P04110_001	Banana	plastid	77.32	75.91
CDY03835	Canola	plastid	76.95	75.82
CDY47581	Canola	plastid	76.95	75.82
Bra031427.1-P	Field mustard	plastid	76.95	75.82
CDY15020	Canola	plastid	76.21	75.65
Solyc10g007690.2.1	Tomato	plastid	76.58	75.46
Solyc12g011280.1.1	Tomato	plastid	76.21	75.09
PGSC0003DMT400020100	Potato	plastid	76.21	75.09
CDY12903	Canola	plastid	75.46	74.91
Bra027083.1-P	Field mustard	plastid	75.09	74.54
CDY57375	Canola	plastid	75.09	74.54
AT1G61520.1	Thale cress	plastid	75.46	74.36
KRH74072	Soybean	mitochondrion, nucleus, plastid	75.09	73.19
KRH14048	Soybean	nucleus, plastid	75.09	73.19
Bra038584.1-P	Field mustard	plastid	71.38	66.9
TraesCS2B01G220100.1	Wheat	golgi, plastid	39.41	41.57
TraesCS6B01G350500.1	Wheat	plastid	38.66	40.47
TraesCS5B01G210800.2	Wheat	cytosol, plastid	35.69	40.34
TraesCS5B01G227900.1	Wheat	plastid	36.43	40.0
TraesCS7B01G192500.1	Wheat	plastid	32.71	35.92
TraesCS6B01G122500.1	Wheat	cytosol, extracellular, plastid	21.19	35.62
TraesCS6B01G122700.1	Wheat	mitochondrion, plastid	27.14	34.43
TraesCS6B01G312900.1	Wheat	plastid	17.47	32.41
TraesCS1B01G317500.1	Wheat	plastid	18.22	32.03
TraesCS5B01G462800.1	Wheat	plastid	31.6	31.95
TraesCS5B01G463000.1	Wheat	plastid	31.6	31.95
TraesCS1B01G451100.1	Wheat	plastid	31.6	31.72
TraesCS1B01G388200.1	Wheat	plastid	31.23	31.7
TraesCS5B01G463100.1	Wheat	plastid	31.23	31.58
TraesCS6B01G122600.1	Wheat	plastid	31.23	31.58
TraesCS1B01G433300.1	Wheat	plastid	31.23	31.58
TraesCS7B01G103300.1	Wheat	plastid	31.23	31.58
TraesCS5B01G353200.1	Wheat	plastid	30.86	31.32
TraesCS7B01G103400.1	Wheat	plastid	30.86	31.2
TraesCS1B01G432700.1	Wheat	plastid	30.86	31.2
TraesCS1B01G388300.1	Wheat	plastid	30.48	30.94
TraesCS1B01G388500.1	Wheat	plastid	30.48	30.94
TraesCS6B01G122800.1	Wheat	plastid	30.48	30.83
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	32.34	30.42
TraesCS5B01G322900.1	Wheat	plastid	29.74	30.42
TraesCS2B01G340300.1	Wheat	plastid	27.88	29.41
TraesCS2B01G233400.1	Wheat	plastid	30.11	28.32
TraesCS5B01G462900.1	Wheat	plastid	20.07	26.47
TraesCS5B01G175000.1	Wheat	plastid	29.37	25.57

Protein Annotations

EnsemblPlants:TraesCS6B01G191500.1	EnsemblPlantsGene:TraesCS6B01G191500	Gene3D:1.10.3460.10	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	InterPro:IPR023329	PANTHER:PTHR21649	PANTHER:PTHR21649:SF14	PFAM:PF00504
SEG:seg	SUPFAM:SSF103511	MapMan:1.1.4.1.3	:	:	:

Description

No Description!

Coordinates

chr6B:+:225867206..225868316

Molecular Weight (calculated)

29289.3 Da

IEP (calculated)

9.160

GRAVY (calculated)

-0.146

Length

269 amino acids

Sequence
(BLAST)

001: MAAQGLLSGR QLLGRPLQSS ISRSSSSRKS AFVVRASSSP PAKQNDNRQL WFASKQSLTY LDGTLPGDFG FDPLGLSDPE GTGGFIEPRW LAYGEIFNGR
101: TAMMGVVGMI APEALGKVGL VPPETAIPWF QAGAIPPAGT YQYWADPYTL FVFEMALIGF AEHRRLQDWY NPGSMGKQYF LGLEKYLGGS GDPAYPGGPI
201: FNPLGFGTKS EKEMKELKLK EIKNGRLAML AFLGMSLQAI FTGVGPFQNL LDHLSDPVNN NILTSLKFH

Best Arabidopsis Sequence Match ( AT1G61520.1 )
(BLAST)

001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Arabidopsis Description

LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.