Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G213000.1 | Wheat | plastid | 89.92 | 78.39 |
| TraesCS5D01G219100.1 | Wheat | plastid | 90.34 | 78.18 |
| HORVU5Hr1G062240.1 | Barley | plastid | 89.5 | 74.74 |
| Zm00001d005814_P002 | Maize | plastid | 79.83 | 70.11 |
| Os09t0439500-01 | Rice | plastid | 76.89 | 69.32 |
| KXG35708 | Sorghum | plastid | 77.31 | 66.91 |
| KRH12566 | Soybean | plastid | 72.27 | 66.15 |
| KRH37524 | Soybean | plastid | 71.85 | 65.77 |
| VIT_11s0016g00730.t01 | Wine grape | plastid | 70.59 | 64.86 |
| PGSC0003DMT400007514 | Potato | plastid | 70.17 | 64.23 |
| Solyc12g009200.1.1 | Tomato | nucleus, plastid | 70.17 | 64.23 |
| Bra016522.1-P | Field mustard | plastid | 68.07 | 60.9 |
| CDX83783 | Canola | plastid | 68.07 | 60.9 |
| CDX96677 | Canola | plastid | 68.07 | 60.9 |
| AT1G19150.1 | Thale cress | plastid | 68.07 | 60.0 |
| TraesCS2B01G220100.1 | Wheat | golgi, plastid | 58.4 | 54.51 |
| GSMUA_Achr9P18200_001 | Banana | plastid | 30.25 | 52.55 |
| TraesCS5B01G227900.1 | Wheat | plastid | 42.44 | 41.22 |
| TraesCS6B01G122500.1 | Wheat | cytosol, extracellular, plastid | 25.63 | 38.12 |
| TraesCS6B01G350500.1 | Wheat | plastid | 39.5 | 36.58 |
| TraesCS6B01G191500.1 | Wheat | plastid | 40.34 | 35.69 |
| TraesCS6B01G122700.1 | Wheat | mitochondrion, plastid | 30.25 | 33.96 |
| TraesCS7B01G192500.1 | Wheat | plastid | 34.45 | 33.47 |
| TraesCS1B01G317500.1 | Wheat | plastid | 21.43 | 33.33 |
| TraesCS2B01G340300.1 | Wheat | plastid | 35.71 | 33.33 |
| TraesCS6B01G312900.1 | Wheat | plastid | 19.33 | 31.72 |
| TraesCS1B01G432700.1 | Wheat | plastid | 34.87 | 31.2 |
| TraesCS5B01G353200.1 | Wheat | plastid | 34.45 | 30.94 |
| TraesCS6B01G122800.1 | Wheat | plastid | 34.45 | 30.83 |
| TraesCS1B01G433300.1 | Wheat | plastid | 34.45 | 30.83 |
| TraesCS5B01G463100.1 | Wheat | plastid | 34.45 | 30.83 |
| TraesCS1B01G388200.1 | Wheat | plastid | 34.03 | 30.57 |
| TraesCS1B01G388500.1 | Wheat | plastid | 34.03 | 30.57 |
| TraesCS5B01G463000.1 | Wheat | plastid | 34.03 | 30.45 |
| TraesCS6B01G122600.1 | Wheat | plastid | 34.03 | 30.45 |
| TraesCS5B01G462800.1 | Wheat | plastid | 34.03 | 30.45 |
| TraesCS7B01G103300.1 | Wheat | plastid | 33.61 | 30.08 |
| TraesCS1B01G451100.1 | Wheat | plastid | 33.61 | 29.85 |
| TraesCS1B01G388300.1 | Wheat | plastid | 33.19 | 29.81 |
| TraesCS7B01G103400.1 | Wheat | plastid | 33.19 | 29.7 |
| TraesCS2B01G233400.1 | Wheat | plastid | 35.29 | 29.37 |
| TraesCS5B01G322900.1 | Wheat | plastid | 31.93 | 28.9 |
| TraesCS4B01G089500.1 | Wheat | mitochondrion, plastid | 34.03 | 28.32 |
| TraesCS5B01G462900.1 | Wheat | plastid | 21.85 | 25.49 |
| TraesCS5B01G175000.1 | Wheat | plastid | 32.35 | 24.92 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G210800.2 | EnsemblPlantsGene:TraesCS5B01G210800 | Gene3D:1.10.3460.10 | GO:GO:0005575 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009765 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | InterPro:Chloro_AB-bd_pln |
| InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | InterPro:IPR023329 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF5 | PFAM:PF00504 |
| SEG:seg | SUPFAM:SSF103511 | MapMan:1.1.4.1.6 | : | : | : |
Description
No Description!
Coordinates
chr5B:-:381715163..381715982
Molecular Weight (calculated)
26708.0 Da
IEP (calculated)
5.581
GRAVY (calculated)
-0.138
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: ATKSSLSTVC EPLGPDRPVW FPGTAPPPWL DGSLPGDFGF DPLGFGSEPE SLRWFAQAEL MHGRWAMLAA AGILVPEILH KWGFMEEFSW YTAGEREYFA
101: DPLTLFVTQV ALMGWVEGRR WMDYLNPGSV DIEPRFPNRK NPTPDVGYPG GLWFDWGNWG RGSPEPVMVL RTKEIKNGRL AMLAFVGFWF QAVYTGQGPL
201: DNLSAHLADP GHCNIFSVRS RTHMVGYLTL HCQYGLLL
101: DPLTLFVTQV ALMGWVEGRR WMDYLNPGSV DIEPRFPNRK NPTPDVGYPG GLWFDWGNWG RGSPEPVMVL RTKEIKNGRL AMLAFVGFWF QAVYTGQGPL
201: DNLSAHLADP GHCNIFSVRS RTHMVGYLTL HCQYGLLL
001: MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH
Arabidopsis Description
LHCA6Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCQ4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.