CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12566	Soybean	plastid	96.92	96.92
VIT_11s0016g00730.t01	Wine grape	plastid	80.38	80.69
PGSC0003DMT400007514	Potato	plastid	80.0	80.0
Solyc12g009200.1.1	Tomato	nucleus, plastid	79.62	79.62
CDX96677	Canola	plastid	75.38	73.68
AT1G19150.1	Thale cress	plastid	76.15	73.33
Bra016522.1-P	Field mustard	plastid	75.0	73.31
CDX83783	Canola	plastid	75.0	73.31
Os09t0439500-01	Rice	plastid	73.46	72.35
TraesCS5B01G210800.2	Wheat	cytosol, plastid	65.77	71.85
GSMUA_Achr9P18200_001	Banana	plastid	37.69	71.53
Zm00001d005814_P002	Maize	plastid	73.08	70.11
TraesCS5A01G213000.1	Wheat	plastid	70.38	67.03
KXG35708	Sorghum	plastid	70.77	66.91
TraesCS5D01G219100.1	Wheat	plastid	70.38	66.55
HORVU5Hr1G062240.1	Barley	plastid	70.77	64.56
KRH06319	Soybean	nucleus, plastid	58.46	56.3
KRH47742	Soybean	nucleus	56.92	52.48
KRH68993	Soybean	plastid	56.92	48.05
KRH54568	Soybean	nucleus, plastid	40.38	41.67
KRH08634	Soybean	endoplasmic reticulum	19.62	41.13
KRH63318	Soybean	plastid	39.62	40.87
KRH08384	Soybean	nucleus, plastid	36.54	38.62
KRH14048	Soybean	nucleus, plastid	40.77	38.41
KRH74072	Soybean	mitochondrion, nucleus, plastid	40.77	38.41
KRH70044	Soybean	mitochondrion, nucleus, plastid	36.15	38.21
KRH08672	Soybean	mitochondrion, nucleus, plastid	36.92	36.36
KRH08676	Soybean	nucleus, plastid	36.92	36.36
KRH42317	Soybean	mitochondrion, nucleus, plastid	36.54	36.12
KRH08669	Soybean	nucleus, plastid	36.54	35.98
KRH51989	Soybean	nucleus	39.23	35.79
KRH58296	Soybean	plastid	33.08	35.39
KRH10515	Soybean	mitochondrion, nucleus, plastid	35.38	35.38
KRH58441	Soybean	mitochondrion, plastid	35.77	35.36
KRH43915	Soybean	mitochondrion, nucleus, plastid	35.0	34.87
KRH70280	Soybean	plastid	33.08	34.54
KRH42185	Soybean	mitochondrion, nucleus, plastid	33.85	34.11
KRH74003	Soybean	nucleus, plastid	32.31	31.7
KRH14122	Soybean	nucleus, plastid	32.31	31.7
KRH22164	Soybean	nucleus, plastid	32.31	31.46
KRH27171	Soybean	mitochondrion, nucleus, plastid	32.31	31.34
KRH65776	Soybean	nucleus, plastid	34.23	30.69
KRH75874	Soybean	mitochondrion, nucleus, plastid	34.23	30.69
KRG92462	Soybean	nucleus, plastid	33.08	29.86
KRH34336	Soybean	plastid	32.69	29.62
KRH38736	Soybean	nucleus, plastid	33.08	29.55
KRH09238	Soybean	mitochondrion, nucleus, plastid	32.69	29.41
KRH61286	Soybean	mitochondrion	24.62	29.22
KRG97750	Soybean	plastid	30.77	28.78
KRH31130	Soybean	nucleus, plastid	30.38	28.01
KRH06016	Soybean	plastid	34.62	27.11
KRH17548	Soybean	cytosol, peroxisome, plastid	19.23	24.75
KRH58809	Soybean	mitochondrion	22.31	18.3

Protein Annotations

MapMan:1.1.4.1.6	Gene3D:1.10.3460.10	EMBL:ACUP02005458	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
EnsemblPlantsGene:GLYMA_09G071400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
GO:GO:0031409	UniProt:I1L1S1	InterPro:IPR023329	EnsemblPlants:KRH37524	ProteinID:KRH37524	ProteinID:KRH37524.1
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF5	SUPFAM:SSF103511	UniParc:UPI0002337BA3	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:7301974..7304765

Molecular Weight (calculated)

28924.9 Da

IEP (calculated)

5.109

GRAVY (calculated)

-0.060

Length

260 amino acids

Sequence
(BLAST)

001: MALALSSTAL SSLPNREIRQ KGFPERTPTC LSLTRRTIAN ATKGVSAVCE PLPPDRPLWF PGSSPPEWLD GSLPGDFGFD PLGLGSDPEL LKWFAQAELM
101: HSRWAMLAVF GILVPELLER IGYIENFSWY DAGTREYFVD PTTLFVVQMG LMGWVEGRRW ADIVNPGSVD IEPKVPHVTN PKPDVGYPGG LWFDPMMWGR
201: GSPEPVMVLR TKEIKNGRLA MLAFVGFWFQ AIYTGEGPIE NLMAHLADPG HCNIFSAFTR

Best Arabidopsis Sequence Match ( AT1G19150.1 )
(BLAST)

001: MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH

Arabidopsis Description

LHCA6Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.