CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42185	Soybean	mitochondrion, nucleus, plastid	97.12	91.47
KRH10515	Soybean	mitochondrion, nucleus, plastid	89.71	83.85
KRH43915	Soybean	mitochondrion, nucleus, plastid	88.89	82.76
VIT_12s0055g01110.t01	Wine grape	plastid	87.24	82.49
KRH12566	Soybean	plastid	35.8	33.46
KRH37524	Soybean	plastid	35.39	33.08
KRH54568	Soybean	nucleus, plastid	31.69	30.56
KRH51989	Soybean	nucleus	35.8	30.53
KRH63318	Soybean	plastid	31.28	30.16
KRH06319	Soybean	nucleus, plastid	32.92	29.63
KRH08384	Soybean	nucleus, plastid	29.63	29.27
KRH70044	Soybean	mitochondrion, nucleus, plastid	29.22	28.86
KRH08672	Soybean	mitochondrion, nucleus, plastid	30.86	28.41
KRH08676	Soybean	nucleus, plastid	30.86	28.41
KRH08669	Soybean	nucleus, plastid	30.86	28.41
KRH42317	Soybean	mitochondrion, nucleus, plastid	30.45	28.14
KRH58441	Soybean	mitochondrion, plastid	30.04	27.76
KRH22164	Soybean	nucleus, plastid	30.45	27.72
KRG97750	Soybean	plastid	31.69	27.7
KRH47742	Soybean	nucleus	32.1	27.66
KRH27171	Soybean	mitochondrion, nucleus, plastid	30.45	27.61
KRH74072	Soybean	mitochondrion, nucleus, plastid	31.28	27.54
KRH14048	Soybean	nucleus, plastid	31.28	27.54
KRH08634	Soybean	endoplasmic reticulum	13.99	27.42
KRH31130	Soybean	nucleus, plastid	31.69	27.3
KRH61286	Soybean	mitochondrion	24.28	26.94
KRH65776	Soybean	nucleus, plastid	32.1	26.9
KRH75874	Soybean	mitochondrion, nucleus, plastid	32.1	26.9
KRH68993	Soybean	plastid	33.33	26.3
KRH70280	Soybean	plastid	26.75	26.1
KRH14122	Soybean	nucleus, plastid	27.16	24.91
KRH74003	Soybean	nucleus, plastid	26.75	24.53
KRH09238	Soybean	mitochondrion, nucleus, plastid	28.81	24.22
KRH38736	Soybean	nucleus, plastid	28.81	24.05
KRH34336	Soybean	plastid	28.4	24.04
KRG92462	Soybean	nucleus, plastid	28.4	23.96
KRH06016	Soybean	plastid	28.81	21.08
KRH17548	Soybean	cytosol, peroxisome, plastid	17.28	20.79
KRH58809	Soybean	mitochondrion	18.52	14.2

Protein Annotations

MapMan:1.1.1.1.4	Gene3D:1.10.3460.10	UniProt:A0A0R0K095	EMBL:ACUP02003247	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_05G119000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	EnsemblPlants:KRH58296	ProteinID:KRH58296	ProteinID:KRH58296.1
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF28	SUPFAM:SSF103511	UniParc:UPI0006EDB92F	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:31171336..31172510

Molecular Weight (calculated)

26019.1 Da

IEP (calculated)

6.117

GRAVY (calculated)

0.065

Length

243 amino acids

Sequence
(BLAST)

001: MAAATSSAVL NGFGSHFLCG GKRSHALLAA GIGGKVGAVK SWIPAVKGGG NFIDPEWLDG SLPGDYGFDP LGLGKDPAFL KWYREAELIH GRWAMAAVVG
101: IFIGQAWSGV PWFEAGADPN AIAPFSFGSL LGTQLLLMGW VESKRWVDFF NPDSQSVEWA TPWSRTAENF GNSTGEQGYP GGKFFDPLGF AGTIKDGVYI
201: PDTDKLERLK LTEIKHARIA MLAMLIFYFE AGQGKTPLGA LGL

Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL

Arabidopsis Description

LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.