CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58441	Soybean	mitochondrion, plastid	98.86	98.86
KRH08634	Soybean	endoplasmic reticulum	46.39	98.39
EER97145	Sorghum	extracellular, vacuole	61.98	95.32
KRH08676	Soybean	nucleus, plastid	95.44	95.08
KRH08669	Soybean	nucleus, plastid	94.68	94.32
KRH08672	Soybean	mitochondrion, nucleus, plastid	94.68	94.32
Os01t0600900-02	Rice	plastid	88.21	88.89
TraesCS5A01G454400.1	Wheat	mitochondrion, plastid	56.27	88.62
Zm00001d021435_P001	Maize	plastid	88.21	88.55
EES18693	Sorghum	plastid	88.97	88.3
Zm00001d039040_P001	Maize	plastid	88.97	87.97
EER97143	Sorghum	plastid	87.45	87.79
Zm00001d009589_P001	Maize	plastid	87.83	87.17
Os09t0346500-04	Rice	plastid	86.31	85.66
KRH70280	Soybean	plastid	78.33	82.73
KRH74003	Soybean	nucleus, plastid	77.57	76.98
KRH14122	Soybean	nucleus, plastid	76.81	76.23
KRH22164	Soybean	nucleus, plastid	68.44	67.42
KRH27171	Soybean	mitochondrion, nucleus, plastid	68.44	67.16
KRH34336	Soybean	plastid	44.49	40.77
KRG92462	Soybean	nucleus, plastid	44.49	40.62
KRH38736	Soybean	nucleus, plastid	44.11	39.86
KRH09238	Soybean	mitochondrion, nucleus, plastid	43.73	39.79
KRH70044	Soybean	mitochondrion, nucleus, plastid	35.36	37.8
KRH08384	Soybean	nucleus, plastid	35.36	37.8
KRH37524	Soybean	plastid	36.12	36.54
KRH12566	Soybean	plastid	35.36	35.77
KRH17548	Soybean	cytosol, peroxisome, plastid	27.0	35.15
KRH06016	Soybean	plastid	42.21	33.43
KRH74072	Soybean	mitochondrion, nucleus, plastid	34.98	33.33
KRH14048	Soybean	nucleus, plastid	34.6	32.97
KRH06319	Soybean	nucleus, plastid	33.08	32.22
KRH54568	Soybean	nucleus, plastid	30.8	32.14
KRH63318	Soybean	plastid	30.42	31.75
KRH65776	Soybean	nucleus, plastid	33.84	30.69
KRH75874	Soybean	mitochondrion, nucleus, plastid	33.84	30.69
KRH58296	Soybean	plastid	28.14	30.45
KRH47742	Soybean	nucleus	31.56	29.43
KRH43915	Soybean	mitochondrion, nucleus, plastid	28.9	29.12
KRH10515	Soybean	mitochondrion, nucleus, plastid	28.52	28.85
KRG97750	Soybean	plastid	30.42	28.78
KRH42185	Soybean	mitochondrion, nucleus, plastid	28.14	28.68
KRH31130	Soybean	nucleus, plastid	30.42	28.37
KRH51989	Soybean	nucleus	29.66	27.37
KRH68993	Soybean	plastid	31.94	27.27
KRH58809	Soybean	mitochondrion	28.9	23.97
KRH61286	Soybean	mitochondrion	15.21	18.26

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:100805310	EMBL:ACUP02004798	EMBL:BT099267	UniProt:C6TNE6
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_08G082900	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768
GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	GO:GO:0046872	InterPro:IPR023329
EnsemblPlants:KRH42317	ProteinID:KRH42317	ProteinID:KRH42317.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF55
SUPFAM:SSF103511	UniParc:UPI00005FFF81	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:6275661..6277017

Molecular Weight (calculated)

27921.3 Da

IEP (calculated)

5.085

GRAVY (calculated)

-0.006

Length

263 amino acids

Sequence
(BLAST)

001: MAAASSMALS SPSLAGKAVK LGPSAPEVGR VSMRKTVTKQ VSSGSPWYGP DRVKYLGPFS GEPPSYLTGE FPGDYGWDTA GLSADPETFA KNRELEVIHS
101: RWAMLGALGC VFPELLSRNG VKFGEAVWFK AGSQIFSEGG LDYLGNPSLI HAQSILAIWA TQVILMGAVE GYRIAGGPLG EVTDPIYPGG SFDPLGLADD
201: PEAFAELKVK ELKNGRLAMF SMFGFFVQAI VTGKGPLENL ADHLADPVNN NAWAYATNFV PGK

Best Arabidopsis Sequence Match ( AT1G29930.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.3Chlorophyll a-b binding protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P04778]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.