Factsheet for Zm00001d039040_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20701693
plastid: 22065420
plastid: 23198870

msms PMID: 20701693 doi

A Campos, PK Carvajal-Vallejos, E Villalobos, CF Franco, AM Almeida, AV Coelho, JM Torné, M Santos

Instituto de Tecnologia Química e Biológica (ITQB), Universidade Nova de Lisboa, Oeiras, Portugal.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18693	Sorghum	plastid	98.87	99.25
Zm00001d009589_P001	Maize	plastid	97.37	97.74
Os01t0600900-02	Rice	plastid	92.11	93.87
Zm00001d021435_P001	Maize	plastid	90.98	92.37
TraesCS5A01G454400.1	Wheat	mitochondrion, plastid	57.89	92.22
Os09t0346500-04	Rice	plastid	91.73	92.08
Zm00001d011285_P001	Maize	plastid	90.6	91.29
Zm00001d044399_P001	Maize	plastid	90.23	90.91
Zm00001d044402_P001	Maize	plastid	90.23	90.91
Zm00001d044401_P001	Maize	plastid	90.23	90.91
Zm00001d044396_P001	Maize	plastid	89.1	89.77
KRH08672	Soybean	mitochondrion, nucleus, plastid	88.72	89.39
KRH08669	Soybean	nucleus, plastid	88.35	89.02
KRH08676	Soybean	nucleus, plastid	88.35	89.02
KRH42317	Soybean	mitochondrion, nucleus, plastid	87.97	88.97
KRH58441	Soybean	mitochondrion, plastid	87.59	88.59
KRH70280	Soybean	plastid	73.68	78.71
Zm00001d033132_P001	Maize	plastid	75.94	77.69
Zm00001d033136_P001	Maize	plastid	75.94	77.69
Zm00001d013766_P001	Maize	plastid	37.22	68.75
Zm00001d021784_P001	Maize	plastid	66.92	66.17
Zm00001d006592_P001	Maize	plastid	26.32	56.91
Zm00001d007267_P002	Maize	plastid	45.49	42.76
Zm00001d048998_P001	Maize	plastid	45.11	42.4
Zm00001d020002_P002	Maize	plastid	43.98	37.14
Zm00001d015385_P001	Maize	plastid	33.46	36.33
Zm00001d021906_P001	Maize	plastid	36.47	35.93
Zm00001d006663_P001	Maize	plastid	34.96	35.77
Zm00001d046786_P001	Maize	plastid	33.83	33.71
Zm00001d032197_P001	Maize	plastid	31.2	33.6
Zm00001d005814_P002	Maize	plastid	34.21	33.58
Zm00001d050403_P001	Maize	plastid	30.45	33.2
Zm00001d018157_P001	Maize	plastid	33.46	33.09
Zm00001d021763_P001	Maize	plastid	35.34	32.3
Zm00001d006587_P001	Maize	plastid	34.59	31.62
Zm00001d032051_P001	Maize	mitochondrion	10.53	31.11
Zm00001d001857_P001	Maize	plastid	26.69	28.06
Zm00001d026599_P001	Maize	plastid	25.19	27.02
Zm00001d040012_P001	Maize	plastid	11.65	22.79
Zm00001d024372_P001	Maize	plastid	18.8	21.1
Zm00001d011218_P001	Maize	plastid	12.41	20.12

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:100193833	ProteinID:AQK88556.1	UniProt:B4FQ80	EMBL:BT039268
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EMBL:EU959242	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0046872	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	SUPFAM:SSF103511	UniParc:UPI00017B7B82	EnsemblPlantsGene:Zm00001d039040
EnsemblPlants:Zm00001d039040_P001	EnsemblPlants:Zm00001d039040_T001	SEG:seg	:	:	:

Description

light harvesting complex mesophyll7Light harvesting complex mesophyll7

Coordinates

chr6:+:169030660..169031891

Molecular Weight (calculated)

28085.5 Da

IEP (calculated)

4.904

GRAVY (calculated)

0.072

Length

266 amino acids

Sequence
(BLAST)

001: MASSTMALSS TAFAGKAVNV PSSSAFGEAR VTMRKTAAKA KPAAASGSPW YGPDRVLYLG PLSGEPPSYL TGEFPGDYGW DTAGLSADPE TFAKNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS EGGLDYLGNP SLIHAQSILA IWACQVVLMG AVEGYRIAGG PLGEVVDPLY PGGSFDPLGL
201: ADDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHIADP VNNNAWAYAT NFVPGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.