Factsheet for Zm00001d026599_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 20701693
plastid: 21196305
plastid: 22065420
extracellular: 22192489
plastid: 23198870

msms PMID: 20701693 doi

A Campos, PK Carvajal-Vallejos, E Villalobos, CF Franco, AM Almeida, AV Coelho, JM Torné, M Santos

Instituto de Tecnologia Química e Biológica (ITQB), Universidade Nova de Lisboa, Oeiras, Portugal.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 21196305

XY Liu, YD Wu, ZY Shen, Z Shen, HH Li, XM Yu, XF Yan, CH Guo, BC Wang

Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82564	Sorghum	plastid	95.16	92.55
Zm00001d001857_P001	Maize	plastid	94.35	92.49
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	86.29	84.92
Zm00001d032051_P001	Maize	mitochondrion	30.65	84.44
VIT_12s0055g01110.t01	Wine grape	plastid	83.47	80.54
KRH10515	Soybean	mitochondrion, nucleus, plastid	81.45	77.69
KRH43915	Soybean	mitochondrion, nucleus, plastid	81.45	77.39
Solyc01g105030.2.1	Tomato	plastid	79.84	77.34
Solyc01g105050.2.1	Tomato	plastid	79.84	77.34
Bra026099.1-P	Field mustard	plastid	80.24	77.13
PGSC0003DMT400032790	Potato	plastid	79.03	76.56
PGSC0003DMT400032791	Potato	plastid	79.03	76.56
Bra026745.1-P	Field mustard	plastid	79.44	76.06
AT1G15820.1	Thale cress	plastid	77.82	74.81
Bra016650.1-P	Field mustard	plastid	77.42	74.71
Zm00001d040012_P001	Maize	plastid	29.03	52.94
Zm00001d011218_P001	Maize	plastid	32.66	49.39
Zm00001d018157_P001	Maize	plastid	38.71	35.69
Zm00001d006663_P001	Maize	plastid	35.08	33.46
Zm00001d050403_P001	Maize	plastid	32.66	33.2
Zm00001d021906_P001	Maize	plastid	35.08	32.22
Zm00001d032197_P001	Maize	plastid	31.05	31.17
Zm00001d005814_P002	Maize	plastid	33.87	31.0
Zm00001d021763_P001	Maize	plastid	33.87	28.87
Zm00001d015385_P001	Maize	plastid	28.23	28.57
Zm00001d006587_P001	Maize	plastid	33.47	28.52
Zm00001d046786_P001	Maize	plastid	30.24	28.09
Zm00001d021784_P001	Maize	plastid	29.03	26.77
Zm00001d044402_P001	Maize	plastid	27.42	25.76
Zm00001d044401_P001	Maize	plastid	27.42	25.76
Zm00001d044399_P001	Maize	plastid	27.42	25.76
Zm00001d021435_P001	Maize	plastid	27.02	25.57
Zm00001d033132_P001	Maize	plastid	26.61	25.38
Zm00001d033136_P001	Maize	plastid	26.61	25.38
Zm00001d011285_P001	Maize	plastid	27.02	25.38
Zm00001d044396_P001	Maize	plastid	27.02	25.38
Zm00001d039040_P001	Maize	plastid	27.02	25.19
Zm00001d009589_P001	Maize	plastid	26.61	24.91
Zm00001d006592_P001	Maize	plastid	12.1	24.39
Zm00001d048998_P001	Maize	plastid	26.21	22.97
Zm00001d007267_P002	Maize	plastid	25.81	22.61
Zm00001d020002_P002	Maize	plastid	28.23	22.22
Zm00001d013766_P001	Maize	plastid	12.1	20.83
Zm00001d024372_P001	Maize	plastid	15.73	16.46

Protein Annotations

MapMan:1.1.1.1.4	Gene3D:1.10.3460.10	EntrezGene:542321	ProteinID:AQK47209.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	InterPro:IPR023329	UniProt:K7TXI5	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF2
SUPFAM:SSF103511	UniParc:UPI0000F35DF6	EnsemblPlantsGene:Zm00001d026599	EnsemblPlants:Zm00001d026599_P001	EnsemblPlants:Zm00001d026599_T001	SEG:seg

Description

light harvesting chlorophyll a/b binding protein6 light harvesting chlorophyll a/b binding protein6

Coordinates

chr10:+:148715856..148717059

Molecular Weight (calculated)

26588.1 Da

IEP (calculated)

8.849

GRAVY (calculated)

0.151

Length

248 amino acids

Sequence
(BLAST)

001: MALAPTSAAV LKTPFLGARR ALANAAAKPA PRRALVVAAA AAAKKSWIPA IKSDAEIVNP PWLDGSLPGD FGFDPLGLGK DPAFLKWYRE AELIHGRWAM
101: AAVLGIFVGQ AWSGIPWFEA GADPSAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ AVEWATPWSR TAENFANFTG EQGYPGGKFF DPLGLAGTVK
201: DGVYIPDVDK LERLKLAEIK HARIAMLAML AFYFEAGQGK TPLGALGL

Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL

Arabidopsis Description

LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.