Factsheet for Zm00001d033136_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 20701693
plastid: 22065420
extracellular: 22192489
plastid: 23198870
mitochondrion: 27297264

msms PMID: 20701693 doi

A Campos, PK Carvajal-Vallejos, E Villalobos, CF Franco, AM Almeida, AV Coelho, JM Torné, M Santos

Instituto de Tecnologia Química e Biológica (ITQB), Universidade Nova de Lisboa, Oeiras, Portugal.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033132_P001	Maize	plastid	100.0	100.0
EER93861	Sorghum	plastid	98.85	98.09
Os03t0592500-01	Rice	extracellular	95.38	94.3
TraesCS5D01G329200.1	Wheat	plastid	91.92	90.87
TraesCS5B01G322900.1	Wheat	plastid	91.92	90.87
TraesCS5A01G322500.1	Wheat	plastid	91.92	90.87
VIT_12s0057g00630.t01	Wine grape	plastid	88.85	87.17
PGSC0003DMT400015740	Potato	plastid	88.08	86.42
GSMUA_Achr4P33040_001	Banana	plastid, unclear	87.69	86.36
KRH74003	Soybean	nucleus, plastid	87.31	85.66
KRH14122	Soybean	nucleus, plastid	87.31	85.66
Solyc07g047850.2.1	Tomato	plastid	87.31	85.66
PGSC0003DMT400010985	Potato	plastid	86.54	84.91
Solyc12g006140.1.1	Tomato	plastid	86.15	84.53
CDY15050	Canola	plastid	85.77	84.15
CDX93077	Canola	plastid	85.38	83.77
Bra013183.1-P	Field mustard	plastid	85.38	83.77
AT2G05070.1	Thale cress	plastid	85.0	83.4
CDY20039	Canola	plastid	84.62	83.02
Bra039070.1-P	Field mustard	plastid	84.62	83.02
Bra025297.1-P	Field mustard	plastid	84.62	82.71
CDY49770	Canola	plastid	84.62	82.71
CDY13732	Canola	plastid	84.62	82.71
CDY00149	Canola	plastid	84.62	82.71
CDY03989	Canola	plastid	84.23	82.33
CDX83726	Canola	plastid	83.85	81.95
Bra033022.1-P	Field mustard	plastid	79.23	79.84
Zm00001d021435_P001	Maize	plastid	78.08	77.48
Zm00001d013766_P001	Maize	plastid	42.69	77.08
Zm00001d009589_P001	Maize	plastid	77.69	76.23
Zm00001d039040_P001	Maize	plastid	77.69	75.94
Zm00001d044401_P001	Maize	plastid	76.54	75.38
Zm00001d011285_P001	Maize	plastid	76.54	75.38
Zm00001d044402_P001	Maize	plastid	76.54	75.38
Zm00001d044399_P001	Maize	plastid	76.54	75.38
Zm00001d044396_P001	Maize	plastid	76.54	75.38
AT3G27690.2	Thale cress	golgi, plastid	85.38	74.5
Zm00001d021784_P001	Maize	plastid	72.31	69.89
HORVU5Hr1G082420.1	Barley	plastid	91.92	69.68
AT2G05100.2	Thale cress	plastid	77.69	63.72
Zm00001d006592_P001	Maize	plastid	24.23	51.22
Zm00001d007267_P002	Maize	plastid	45.38	41.7
Zm00001d048998_P001	Maize	plastid	45.0	41.34
Zm00001d015385_P001	Maize	plastid	33.08	35.1
Zm00001d020002_P002	Maize	plastid	41.92	34.6
Zm00001d006663_P001	Maize	plastid	32.69	32.69
Zm00001d032197_P001	Maize	plastid	30.77	32.39
Zm00001d046786_P001	Maize	plastid	33.08	32.21
Zm00001d050403_P001	Maize	plastid	30.0	31.97
Zm00001d021906_P001	Maize	plastid	33.08	31.85
Zm00001d018157_P001	Maize	plastid	31.92	30.86
Zm00001d005814_P002	Maize	plastid	31.15	29.89
Zm00001d032051_P001	Maize	mitochondrion	10.0	28.89
Zm00001d021763_P001	Maize	plastid	31.92	28.52
Zm00001d006587_P001	Maize	plastid	31.15	27.84
Zm00001d026599_P001	Maize	plastid	25.38	26.61
Zm00001d001857_P001	Maize	plastid	25.77	26.48
Zm00001d024372_P001	Maize	plastid	18.85	20.68
Zm00001d011218_P001	Maize	plastid	11.54	18.29
Zm00001d040012_P001	Maize	plastid	9.23	17.65

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:100281879	EntrezGene:103643653	UniProt:B6SZT9	EMBL:BT083722
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EMBL:EU958254	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	ProteinID:ONM06830.1
ProteinID:ONM06834.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF33	SUPFAM:SSF103511	UniParc:UPI000182CF49
EnsemblPlantsGene:Zm00001d033136	EnsemblPlants:Zm00001d033136_P001	EnsemblPlants:Zm00001d033136_T001	:	:	:

Description

light harvesting chlorophyll binding protein9light harvesting chlorophyll binding protein9

Coordinates

chr1:+:251754657..251755894

Molecular Weight (calculated)

27853.2 Da

IEP (calculated)

5.064

GRAVY (calculated)

0.017

Length

260 amino acids

Sequence
(BLAST)

001: MAASALHQTT SFLGQALVSR AAGVDAGGRI TMRRTVKSVP QSIWYGPDRP KYLGPFSEQT PSYLTGEFPG DYGWDTAGLS ADPETFARNR ELEVIHSRWA
101: MLGALGCVFP EILAKNGVKF GEAVWFKAGA QIFSEGGLDY LGNPNLVHAQ SILAIWACQV VLMGFVEGYR VGGGPLGEGL DKVYPGGAFD PLGLADDPDT
201: AAELKVKELK NGRLAMFSMF GFFVQAIVTG KGPIENLFDH VADPVANNAW AYATNFVPGN

Best Arabidopsis Sequence Match ( AT2G05100.1 )
(BLAST)

001: MATSAIQQSS FAGQTALKPS NELLRKVGVS GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE NLFDHLADPV ANNAWSYATN FVPGN

Arabidopsis Description

LHCB2.1photosystem II light harvesting complex gene 2.1 [Source:TAIR;Acc:AT2G05100]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.