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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY49770 Canola plastid 99.25 99.25
CDY20039 Canola plastid 98.87 99.25
CDY13732 Canola plastid 98.87 98.87
CDY03989 Canola plastid 98.87 98.87
CDY00149 Canola plastid 98.87 98.87
CDX93077 Canola plastid 96.24 96.6
CDY15050 Canola plastid 95.86 96.23
VIT_12s0057g00630.t01 Wine grape plastid 87.97 88.3
Solyc12g006140.1.1 Tomato plastid 87.59 87.92
KRH74003 Soybean nucleus, plastid 87.59 87.92
PGSC0003DMT400010985 Potato plastid 86.84 87.17
KRH14122 Soybean nucleus, plastid 86.47 86.79
AT3G27690.2 Thale cress golgi, plastid 96.62 86.24
GSMUA_Achr4P33040_001 Banana plastid, unclear 85.34 85.98
PGSC0003DMT400015740 Potato plastid 84.96 85.28
Solyc07g047850.2.1 Tomato plastid 84.59 84.91
Os03t0592500-01 Rice extracellular 83.83 84.79
TraesCS5D01G329200.1 Wheat plastid 83.08 84.03
TraesCS5A01G322500.1 Wheat plastid 83.08 84.03
TraesCS5B01G322900.1 Wheat plastid 83.08 84.03
Zm00001d033136_P001 Maize plastid 81.95 83.85
Zm00001d033132_P001 Maize plastid 81.95 83.85
EER93861 Sorghum plastid 81.95 83.21
CDY30369 Canola plastid 45.49 79.61
CDX84647 Canola plastid 74.44 74.44
CDY43676 Canola plastid 74.44 74.16
CDY66768 Canola plastid 74.44 74.16
CDX79562 Canola plastid 74.06 74.06
CDY43198 Canola plastid 74.06 73.78
CDY35271 Canola plastid 74.06 73.78
CDY26306 Canola plastid 74.06 73.78
CDX99866 Canola plastid 74.06 73.78
CDX90218 Canola plastid 74.06 73.78
CDX84316 Canola plastid 73.68 73.68
CDY17247 Canola plastid 73.68 73.68
CDY17248 Canola plastid 73.68 73.68
CDX98158 Canola plastid 73.31 73.03
Zm00001d013766_P001 Maize plastid 38.35 70.83
CDY17250 Canola mitochondrion, plastid 41.73 68.1
CDY66572 Canola cytosol, extracellular, plastid 36.09 67.13
CDY14320 Canola plastid 58.65 66.67
CDY18320 Canola plastid 58.27 66.24
CDY52238 Canola plastid 57.89 65.81
HORVU5Hr1G082420.1 Barley plastid 82.71 64.14
CDY28778 Canola plastid 57.52 59.77
CDX84315 Canola plastid 73.31 59.27
CDY05098 Canola plastid 41.73 39.64
CDX90755 Canola plastid 41.73 39.64
CDY60092 Canola plastid 40.23 38.08
CDX78277 Canola plastid 31.58 34.85
CDX73435 Canola plastid 31.58 34.85
CDX67613 Canola plastid 31.58 34.85
CDY07517 Canola plastid 31.58 34.85
CDX83967 Canola extracellular, vacuole 3.01 34.78
CDY45980 Canola plastid 40.98 33.64
CDY20401 Canola plastid 41.35 33.64
CDY43936 Canola plastid 31.58 32.81
CDX86864 Canola plastid 25.56 32.54
CDX89120 Canola plastid 31.2 32.42
CDX99044 Canola plastid 30.08 31.75
CDY47410 Canola plastid 30.08 31.75
CDY26347 Canola plastid 30.08 31.37
CDY12903 Canola plastid 31.95 31.37
CDY57375 Canola plastid 31.95 31.37
CDY51572 Canola plastid 30.45 31.27
CDY47581 Canola plastid 31.95 31.14
CDY03835 Canola plastid 31.95 31.14
CDY15020 Canola plastid 31.58 31.0
CDX83783 Canola plastid 30.83 30.83
CDX96677 Canola plastid 30.83 30.83
CDY44667 Canola plastid 32.33 29.86
CDY53084 Canola plastid 32.33 29.76
CDY04834 Canola plastid 31.95 29.62
CDY43213 Canola mitochondrion, plastid 28.2 29.07
CDY17055 Canola mitochondrion, plastid 27.82 28.68
CDX74808 Canola plastid 28.95 27.9
CDY20518 Canola plastid 28.57 27.54
CDX96833 Canola plastid 26.32 27.03
CDX81735 Canola plastid 26.32 27.03
CDY52865 Canola plastid 26.32 27.03
CDY33376 Canola plastid 25.56 26.36
CDY35042 Canola plastid 25.56 26.36
CDX83966 Canola plastid 21.8 25.44
CDY61708 Canola plastid 25.19 19.14
Protein Annotations
MapMan:1.1.1.1.1Gene3D:1.10.3460.10GO:A0A078D2W2EnsemblPlants:CDX83726ProteinID:CDX83726ProteinID:CDX83726.1
InterPro:Chloro_AB-bd_plnInterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sfGO:GO:0005575GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009765GO:GO:0009987GO:GO:0015979GO:GO:0016020EnsemblPlantsGene:GSBRNA2T00139448001
InterPro:IPR023329PFAM:PF00504PANTHER:PTHR21649PANTHER:PTHR21649:SF33SUPFAM:SSF103511UniParc:UPI0004EBF721
SEG:seg:::::
Description
BnaC07g24660D
Coordinates
chrLK031833:+:1897338..1898587
Molecular Weight (calculated)
28682.1 Da
IEP (calculated)
5.699
GRAVY (calculated)
-0.117
Length
266 amino acids
Sequence
(BLAST)
001: MATSAIQHSS FAGQTALKPS NDLLRKVGAS NGGGRVVMRR TVKSTPQSIW YGPDRPKYLG PFSENTPSYL TGEYPGDYGW DTAGLSADPE TFAKNRELEV
101: IHSRWAMLGA LGCTFPEILS KNGVKFGEAV WFKAGSQIFS EGGLDYLGNP NLIHAQSILA IWASQVVLMG LIEGYRIGGG PLGEGLDPLY PGGAFDPLNL
201: AEDPEAFSEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPI ENLFDHVADP VANNAWAYAT NFAPVK
Best Arabidopsis Sequence Match ( AT3G27690.2 )
(BLAST)
001: MNTLLYKRRL QFNNISFSLT SFLFLCSCLE EAMATSAIQH SSFAGQTTLK PSNDLLRKIG ASNGGGRIIM RRTVKSTPQS IWYGPDRPKY LGPFSENTPS
101: YLTGEYPGDY GWDTAGLSAD PETFAKNREL EVIHSRWAML GALGCTFPEI LSKNGVKFGE AVWFKAGSQI FSEGGLDYLG NPNLIHAQSI LAIWACQVVL
201: MGFIEGYRIG GGPLGEGLDP LYPGGAFDPL NLAEDPEAFS ELKVKELKNG RLAMFSMFGF FVQAIVTGKG PIENLFDHIA DPVANNAWAY ATNFVPGK
Arabidopsis Description
LHCB2.4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1I9LMB4]
SUBAcon: [golgi,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.