Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | unclear | 91.3 | 14.09 |
| CDX83966 | Canola | plastid | 100.0 | 10.09 |
| CDX96833 | Canola | plastid | 100.0 | 8.88 |
| Os04t0457000-01 | Rice | extracellular, plasma membrane, plastid | 95.65 | 8.73 |
| TraesCS2D01G320900.1 | Wheat | plastid | 95.65 | 8.63 |
| TraesCS2B01G340300.1 | Wheat | plastid | 95.65 | 8.63 |
| OQU82564 | Sorghum | plastid | 95.65 | 8.63 |
| TraesCS2A01G342600.1 | Wheat | plastid | 95.65 | 8.63 |
| Solyc01g105030.2.1 | Tomato | plastid | 95.65 | 8.59 |
| PGSC0003DMT400032791 | Potato | plastid | 95.65 | 8.59 |
| PGSC0003DMT400032790 | Potato | plastid | 95.65 | 8.59 |
| Solyc01g105050.2.1 | Tomato | plastid | 95.65 | 8.59 |
| VIT_12s0055g01110.t01 | Wine grape | plastid | 95.65 | 8.56 |
| CDY35042 | Canola | plastid | 95.65 | 8.53 |
| CDY33376 | Canola | plastid | 95.65 | 8.53 |
| CDX81735 | Canola | plastid | 95.65 | 8.49 |
| CDY52865 | Canola | plastid | 95.65 | 8.49 |
| KRH10515 | Soybean | mitochondrion, nucleus, plastid | 95.65 | 8.46 |
| KRH43915 | Soybean | mitochondrion, nucleus, plastid | 95.65 | 8.43 |
| HORVU2Hr1G079920.1 | Barley | cytosol, mitochondrion, plastid | 95.65 | 7.51 |
| CDY66572 | Canola | cytosol, extracellular, plastid | 39.13 | 6.29 |
| CDY30369 | Canola | plastid | 39.13 | 5.92 |
| CDY17250 | Canola | mitochondrion, plastid | 39.13 | 5.52 |
| CDY52238 | Canola | plastid | 39.13 | 3.85 |
| CDY14320 | Canola | plastid | 39.13 | 3.85 |
| CDY18320 | Canola | plastid | 39.13 | 3.85 |
| CDX99044 | Canola | plastid | 39.13 | 3.57 |
| CDY47410 | Canola | plastid | 39.13 | 3.57 |
| CDY28778 | Canola | plastid | 39.13 | 3.52 |
| CDY43213 | Canola | mitochondrion, plastid | 39.13 | 3.49 |
| CDX79562 | Canola | plastid | 39.13 | 3.38 |
| CDX84316 | Canola | plastid | 39.13 | 3.38 |
| CDX84647 | Canola | plastid | 39.13 | 3.38 |
| CDY17247 | Canola | plastid | 39.13 | 3.38 |
| CDY17248 | Canola | plastid | 39.13 | 3.38 |
| CDY26306 | Canola | plastid | 39.13 | 3.37 |
| CDX99866 | Canola | plastid | 39.13 | 3.37 |
| CDX90218 | Canola | plastid | 39.13 | 3.37 |
| CDY35271 | Canola | plastid | 39.13 | 3.37 |
| CDY43198 | Canola | plastid | 39.13 | 3.37 |
| CDY43676 | Canola | plastid | 39.13 | 3.37 |
| CDY66768 | Canola | plastid | 39.13 | 3.37 |
| CDX98158 | Canola | plastid | 39.13 | 3.37 |
| CDY20518 | Canola | plastid | 39.13 | 3.26 |
| CDX74808 | Canola | plastid | 39.13 | 3.26 |
| CDX90755 | Canola | plastid | 39.13 | 3.21 |
| CDY05098 | Canola | plastid | 39.13 | 3.21 |
| CDY60092 | Canola | plastid | 39.13 | 3.2 |
| CDY04834 | Canola | plastid | 39.13 | 3.14 |
| CDY44667 | Canola | plastid | 39.13 | 3.12 |
| CDY53084 | Canola | plastid | 39.13 | 3.11 |
| CDY17055 | Canola | mitochondrion, plastid | 34.78 | 3.1 |
| CDY45980 | Canola | plastid | 43.48 | 3.09 |
| CDY20401 | Canola | plastid | 43.48 | 3.06 |
| CDX93077 | Canola | plastid | 34.78 | 3.02 |
| CDY15050 | Canola | plastid | 34.78 | 3.02 |
| CDY20039 | Canola | plastid | 34.78 | 3.02 |
| CDY00149 | Canola | plastid | 34.78 | 3.01 |
| CDX83726 | Canola | plastid | 34.78 | 3.01 |
| CDY49770 | Canola | plastid | 34.78 | 3.01 |
| CDX83783 | Canola | plastid | 34.78 | 3.01 |
| CDY13732 | Canola | plastid | 34.78 | 3.01 |
| CDX96677 | Canola | plastid | 34.78 | 3.01 |
| CDY03989 | Canola | plastid | 34.78 | 3.01 |
| CDX73435 | Canola | plastid | 30.43 | 2.9 |
| CDX67613 | Canola | plastid | 30.43 | 2.9 |
| CDX78277 | Canola | plastid | 30.43 | 2.9 |
| CDY07517 | Canola | plastid | 30.43 | 2.9 |
| CDY26347 | Canola | plastid | 30.43 | 2.75 |
| CDX84315 | Canola | plastid | 39.13 | 2.74 |
| CDY43936 | Canola | plastid | 30.43 | 2.73 |
| CDX89120 | Canola | plastid | 30.43 | 2.73 |
| CDY51572 | Canola | plastid | 30.43 | 2.7 |
| CDY57375 | Canola | plastid | 30.43 | 2.58 |
| CDY12903 | Canola | plastid | 30.43 | 2.58 |
| CDY15020 | Canola | plastid | 30.43 | 2.58 |
| CDY61708 | Canola | plastid | 39.13 | 2.57 |
| CDY03835 | Canola | plastid | 30.43 | 2.56 |
| CDY47581 | Canola | plastid | 30.43 | 2.56 |
| CDX86864 | Canola | plastid | 0.0 | 0.0 |
| HORVU2Hr1G079910.1 | Barley | cytosol | 0.0 | 0.0 |
| Zm00001d011218_P001 | Maize | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX83967 | EnsemblPlantsGene:GSBRNA2T00139750001 | ProteinID:CDX83967 | ProteinID:CDX83967.1 | UniParc:UPI0004EEFE21 | MapMan:35.2 |
Description
BnaC08g16780D
Coordinates
chrLK031834:-:1468766..1468837
Molecular Weight (calculated)
2428.1 Da
IEP (calculated)
6.403
GRAVY (calculated)
0.952
Length
23 amino acids
Sequence
(BLAST)
(BLAST)
1: MLAMLVFYFE AGQGKTPLGA LGL
001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL
Arabidopsis Description
LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.