CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20039	Canola	plastid	99.62	100.0
CDY00149	Canola	plastid	99.62	99.62
CDY03989	Canola	plastid	99.62	99.62
CDY13732	Canola	plastid	99.62	99.62
CDX83726	Canola	plastid	99.25	99.25
CDX93077	Canola	plastid	96.99	97.36
CDY15050	Canola	plastid	96.62	96.98
Bra033022.1-P	Field mustard	plastid	93.61	96.51
VIT_12s0057g00630.t01	Wine grape	plastid	88.72	89.06
KRH74003	Soybean	nucleus, plastid	88.35	88.68
Solyc12g006140.1.1	Tomato	plastid	88.35	88.68
PGSC0003DMT400010985	Potato	plastid	87.59	87.92
KRH14122	Soybean	nucleus, plastid	87.22	87.55
AT3G27690.2	Thale cress	golgi, plastid	97.37	86.91
GSMUA_Achr4P33040_001	Banana	plastid, unclear	86.09	86.74
PGSC0003DMT400015740	Potato	plastid	85.71	86.04
Solyc07g047850.2.1	Tomato	plastid	85.34	85.66
Os03t0592500-01	Rice	extracellular	84.59	85.55
Zm00001d033132_P001	Maize	plastid	82.71	84.62
Zm00001d033136_P001	Maize	plastid	82.71	84.62
TraesCS5B01G322900.1	Wheat	plastid	83.08	84.03
TraesCS5D01G329200.1	Wheat	plastid	83.08	84.03
TraesCS5A01G322500.1	Wheat	plastid	83.08	84.03
EER93861	Sorghum	plastid	82.71	83.97
CDY30369	Canola	plastid	46.24	80.92
CDX84647	Canola	plastid	75.19	75.19
CDY43676	Canola	plastid	75.19	74.91
CDY66768	Canola	plastid	75.19	74.91
CDX79562	Canola	plastid	74.81	74.81
CDY43198	Canola	plastid	74.81	74.53
CDX90218	Canola	plastid	74.81	74.53
CDY35271	Canola	plastid	74.81	74.53
CDX99866	Canola	plastid	74.81	74.53
CDY26306	Canola	plastid	74.81	74.53
CDX84316	Canola	plastid	74.44	74.44
CDY17248	Canola	plastid	74.44	74.44
CDY17247	Canola	plastid	74.44	74.44
CDX98158	Canola	plastid	74.06	73.78
Zm00001d013766_P001	Maize	plastid	38.35	70.83
CDY17250	Canola	mitochondrion, plastid	42.11	68.71
CDY66572	Canola	cytosol, extracellular, plastid	36.84	68.53
CDY14320	Canola	plastid	59.4	67.52
CDY18320	Canola	plastid	59.02	67.09
CDY52238	Canola	plastid	58.65	66.67
HORVU5Hr1G082420.1	Barley	plastid	82.71	64.14
CDY28778	Canola	plastid	57.89	60.16
CDX84315	Canola	plastid	74.06	59.88
CDX90755	Canola	plastid	41.35	39.29
CDY05098	Canola	plastid	41.35	39.29
CDY60092	Canola	plastid	39.85	37.72
CDX78277	Canola	plastid	31.58	34.85
CDX67613	Canola	plastid	31.58	34.85
CDX73435	Canola	plastid	31.58	34.85
CDY07517	Canola	plastid	31.58	34.85
CDX83967	Canola	extracellular, vacuole	3.01	34.78
CDY45980	Canola	plastid	40.98	33.64
CDY20401	Canola	plastid	41.35	33.64
CDY43936	Canola	plastid	31.58	32.81
CDX86864	Canola	plastid	25.56	32.54
CDX89120	Canola	plastid	31.2	32.42
CDY47410	Canola	plastid	30.08	31.75
CDX99044	Canola	plastid	30.08	31.75
CDY51572	Canola	plastid	30.83	31.66
CDY26347	Canola	plastid	30.08	31.37
CDY57375	Canola	plastid	31.95	31.37
CDY12903	Canola	plastid	31.95	31.37
CDY03835	Canola	plastid	31.95	31.14
CDY47581	Canola	plastid	31.95	31.14
CDY15020	Canola	plastid	31.58	31.0
CDX96677	Canola	plastid	30.83	30.83
CDX83783	Canola	plastid	30.83	30.83
CDY44667	Canola	plastid	32.33	29.86
CDY53084	Canola	plastid	32.33	29.76
CDY04834	Canola	plastid	31.95	29.62
CDY43213	Canola	mitochondrion, plastid	28.2	29.07
CDY17055	Canola	mitochondrion, plastid	27.82	28.68
CDX74808	Canola	plastid	28.95	27.9
CDY20518	Canola	plastid	28.57	27.54
CDX81735	Canola	plastid	26.32	27.03
CDY52865	Canola	plastid	26.32	27.03
CDX96833	Canola	plastid	26.32	27.03
CDY35042	Canola	plastid	25.56	26.36
CDY33376	Canola	plastid	25.56	26.36
CDX83966	Canola	plastid	21.8	25.44
CDY61708	Canola	plastid	25.19	19.14

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	GO:A0A078IFS9	UniProt:A0A078IFS9	unigene:Bna.610	EnsemblPlants:CDY49770
ProteinID:CDY49770	ProteinID:CDY49770.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00093773001
InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF33	SUPFAM:SSF103511	UniParc:UPI000253FC3B
SEG:seg	:	:	:	:	:

Description

BnaA02g29010DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078IFS9]

Coordinates

chrLK032857:-:90695..91860

Molecular Weight (calculated)

28668.1 Da

IEP (calculated)

5.699

GRAVY (calculated)

-0.125

Length

266 amino acids

Sequence
(BLAST)

001: MATSAIQHSS FAGQTALKPS NDLLRKVGAS NGGGRVVMRR TVKSTPQSIW YGPDRPKYLG PFSENTPSYL TGEYPGDYGW DTAGLSADPE TFAKNRELEV
101: IHSRWAMLGA LGCTFPEILS KNGVKFGEAV WFKAGSQIFS EGGLDYLGNP NLIHAQSILA IWASQVVLMG LIEGYRIGGG PLGEGLDPLY PGGAFDPLNL
201: AEDPEAFSEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPI ENLFDHVADP VANNAWAYAT NFVPGK

Best Arabidopsis Sequence Match ( AT3G27690.2 )
(BLAST)

001: MNTLLYKRRL QFNNISFSLT SFLFLCSCLE EAMATSAIQH SSFAGQTTLK PSNDLLRKIG ASNGGGRIIM RRTVKSTPQS IWYGPDRPKY LGPFSENTPS
101: YLTGEYPGDY GWDTAGLSAD PETFAKNREL EVIHSRWAML GALGCTFPEI LSKNGVKFGE AVWFKAGSQI FSEGGLDYLG NPNLIHAQSI LAIWACQVVL
201: MGFIEGYRIG GGPLGEGLDP LYPGGAFDPL NLAEDPEAFS ELKVKELKNG RLAMFSMFGF FVQAIVTGKG PIENLFDHIA DPVANNAWAY ATNFVPGK

Arabidopsis Description

LHCB2.4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1I9LMB4]
SUBAcon: [golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.