CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89120	Canola	plastid	98.83	98.83
Bra014433.1-P	Field mustard	plastid	98.83	98.83
PGSC0003DMT400037285	Potato	extracellular, vacuole	58.59	96.15
AT3G61470.1	Thale cress	plastid	95.31	94.94
CDY51572	Canola	plastid	93.36	92.28
Solyc10g006230.2.1	Tomato	plastid	87.11	82.59
VIT_01s0010g03620.t01	Wine grape	plastid	86.72	81.92
TraesCS2B01G220100.1	Wheat	golgi, plastid	81.25	81.57
TraesCS2D01G200700.1	Wheat	plastid	81.25	81.57
TraesCS2A01G187200.1	Wheat	plastid	81.25	80.93
KRH06319	Soybean	nucleus, plastid	85.16	80.74
Zm00001d006663_P001	Maize	plastid	81.25	80.0
KXG36552	Sorghum	plastid	81.64	79.47
Os07t0577600-01	Rice	plastid	81.25	79.09
GSMUA_Achr6P20660_001	Banana	mitochondrion	62.11	77.56
Zm00001d021906_P001	Maize	plastid	80.86	76.67
KRH47742	Soybean	nucleus	81.25	73.76
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	71.48	73.49
HORVU2Hr1G036960.4	Barley	plastid	79.69	72.34
KRH68993	Soybean	plastid	80.86	67.21
AT5G28450.1	Thale cress	plastid	44.53	65.9
CDX83783	Canola	plastid	56.64	54.51
CDX96677	Canola	plastid	56.25	54.14
CDX99044	Canola	plastid	48.83	49.6
CDY47410	Canola	plastid	48.83	49.6
CDY17055	Canola	mitochondrion, plastid	40.23	39.92
CDY66572	Canola	cytosol, extracellular, plastid	22.27	39.86
CDY43213	Canola	mitochondrion, plastid	39.84	39.53
CDX67613	Canola	plastid	37.11	39.42
CDX73435	Canola	plastid	37.11	39.42
CDX78277	Canola	plastid	37.11	39.42
CDY07517	Canola	plastid	37.11	39.42
CDY12903	Canola	plastid	41.02	38.75
CDY57375	Canola	plastid	41.02	38.75
CDY47581	Canola	plastid	41.02	38.46
CDY03835	Canola	plastid	41.02	38.46
CDY26347	Canola	plastid	38.28	38.43
CDY15020	Canola	plastid	40.62	38.38
CDY30369	Canola	plastid	22.27	37.5
CDY26306	Canola	plastid	37.5	35.96
CDY35271	Canola	plastid	37.11	35.58
CDY43676	Canola	plastid	37.11	35.58
CDY66768	Canola	plastid	37.11	35.58
CDX99866	Canola	plastid	37.11	35.58
CDX90218	Canola	plastid	37.11	35.58
CDX84316	Canola	plastid	36.72	35.34
CDX84647	Canola	plastid	36.72	35.34
CDX79562	Canola	plastid	36.72	35.34
CDY17248	Canola	plastid	36.72	35.34
CDY17247	Canola	plastid	36.72	35.34
CDX98158	Canola	plastid	36.72	35.21
CDY52238	Canola	plastid	32.03	35.04
CDY43198	Canola	plastid	36.33	34.83
CDY33376	Canola	plastid	34.77	34.5
CDY17250	Canola	mitochondrion, plastid	21.88	34.36
CDY18320	Canola	plastid	31.25	34.19
CDY14320	Canola	plastid	31.25	34.19
CDY35042	Canola	plastid	34.38	34.11
CDX81735	Canola	plastid	34.38	33.98
CDY52865	Canola	plastid	34.38	33.98
CDX96833	Canola	plastid	33.98	33.59
CDX93077	Canola	plastid	32.81	31.7
CDY15050	Canola	plastid	32.81	31.7
CDY20039	Canola	plastid	32.81	31.7
CDY49770	Canola	plastid	32.81	31.58
CDY13732	Canola	plastid	32.81	31.58
CDY03989	Canola	plastid	32.81	31.58
CDX83726	Canola	plastid	32.81	31.58
CDY00149	Canola	plastid	32.81	31.58
CDY20518	Canola	plastid	33.98	31.52
CDX74808	Canola	plastid	33.59	31.16
CDX83966	Canola	plastid	27.73	31.14
CDY05098	Canola	plastid	33.98	31.07
CDX90755	Canola	plastid	33.98	31.07
CDY44667	Canola	plastid	34.38	30.56
CDY53084	Canola	plastid	34.38	30.45
CDX83967	Canola	extracellular, vacuole	2.73	30.43
CDY04834	Canola	plastid	33.98	30.31
CDY60092	Canola	plastid	33.2	30.25
CDX84315	Canola	plastid	35.94	27.96
CDY28778	Canola	plastid	26.95	26.95
CDX86864	Canola	plastid	21.88	26.79
CDY45980	Canola	plastid	32.03	25.31
CDY20401	Canola	plastid	32.03	25.08
CDY61708	Canola	plastid	26.17	19.14

Protein Annotations

MapMan:1.1.4.1.2	Gene3D:1.10.3460.10	GO:A0A078I296	UniProt:A0A078I296	EnsemblPlants:CDY43936	ProteinID:CDY43936
ProteinID:CDY43936.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00077543001	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF57	SUPFAM:SSF103511	UniParc:UPI000182AE48	SEG:seg

Description

BnaC04g21740DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078I296]

Coordinates

chrLK032574:+:78130..79675

Molecular Weight (calculated)

27615.2 Da

IEP (calculated)

7.573

GRAVY (calculated)

0.042

Length

256 amino acids

Sequence
(BLAST)

001: MASLCASSAI AAISSPSFLA GKKLRLNKKL SVPAVSKSAA SVRAVAADPE RPIWFPGSTP PEWLDGSLPG DFGFDPLGLS SDPESLKWNV QAEIVHCRWA
101: MLGAAGIFIP EFLTKIGILN TPSWYTAGEQ EYFTDKTTLF VVELILIGWA EGRRWADIIK PGSVNTDPIF PNNKLTGTDV GYPGGLWFDP LGWGSGSPAK
201: IKELRTKEIK NGRLAMLAVM GAWFQHIYTG TGPIDNLFAH LADPGHATIF AAFTPK

Best Arabidopsis Sequence Match ( AT3G61470.1 )
(BLAST)

001: MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK

Arabidopsis Description

LHCA2Photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SYW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.