Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- extracellular 3
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014433.1-P | Field mustard | plastid | 96.15 | 58.59 |
| CDX89120 | Canola | plastid | 96.15 | 58.59 |
| CDY43936 | Canola | plastid | 96.15 | 58.59 |
| Solyc10g006230.2.1 | Tomato | plastid | 100.0 | 57.78 |
| TraesCS2B01G220100.1 | Wheat | golgi, plastid | 94.23 | 57.65 |
| TraesCS2D01G200700.1 | Wheat | plastid | 94.23 | 57.65 |
| AT3G61470.1 | Thale cress | plastid | 94.87 | 57.59 |
| TraesCS2A01G187200.1 | Wheat | plastid | 94.23 | 57.2 |
| AT5G28450.1 | Thale cress | plastid | 62.82 | 56.65 |
| Bra003451.1-P | Field mustard | plastid | 93.59 | 56.37 |
| CDY51572 | Canola | plastid | 92.95 | 55.98 |
| KRH06319 | Soybean | nucleus, plastid | 96.15 | 55.56 |
| Os07t0577600-01 | Rice | plastid | 93.59 | 55.51 |
| Zm00001d006663_P001 | Maize | plastid | 91.67 | 55.0 |
| KXG36552 | Sorghum | plastid | 92.31 | 54.75 |
| VIT_01s0010g03620.t01 | Wine grape | plastid | 94.23 | 54.24 |
| Zm00001d021906_P001 | Maize | plastid | 91.67 | 52.96 |
| KRH47742 | Soybean | nucleus | 95.51 | 52.84 |
| HORVU2Hr1G036960.4 | Barley | plastid | 94.23 | 52.13 |
| GSMUA_Achr9P01470_001 | Banana | endoplasmic reticulum | 78.21 | 49.0 |
| GSMUA_Achr6P20660_001 | Banana | mitochondrion | 61.54 | 46.83 |
| KRH68993 | Soybean | plastid | 91.67 | 46.43 |
| PGSC0003DMT400035007 | Potato | cytosol, extracellular, vacuole | 40.38 | 39.38 |
| PGSC0003DMT400035006 | Potato | cytosol, extracellular, vacuole | 40.38 | 39.38 |
| PGSC0003DMT400007514 | Potato | plastid | 64.1 | 38.46 |
| PGSC0003DMT400083158 | Potato | plastid | 50.0 | 31.2 |
| PGSC0003DMT400050232 | Potato | plastid | 50.0 | 31.08 |
| PGSC0003DMT400034894 | Potato | plastid | 32.69 | 26.15 |
| PGSC0003DMT400054836 | Potato | plastid | 45.51 | 26.01 |
| PGSC0003DMT400020100 | Potato | plastid | 44.23 | 25.27 |
| PGSC0003DMT400021390 | Potato | plastid | 40.38 | 24.23 |
| PGSC0003DMT400021391 | Potato | plastid | 40.38 | 24.23 |
| PGSC0003DMT400034898 | Potato | plastid | 40.38 | 24.05 |
| PGSC0003DMT400034897 | Potato | plastid | 40.38 | 24.05 |
| PGSC0003DMT400034893 | Potato | plastid | 40.38 | 24.05 |
| PGSC0003DMT400034892 | Potato | plastid | 40.38 | 24.05 |
| PGSC0003DMT400060313 | Potato | plastid | 37.82 | 23.98 |
| PGSC0003DMT400059995 | Potato | plastid | 37.82 | 23.98 |
| PGSC0003DMT400021392 | Potato | plastid | 39.74 | 23.85 |
| PGSC0003DMT400021389 | Potato | plastid | 40.38 | 23.77 |
| PGSC0003DMT400092927 | Potato | plastid | 40.38 | 23.77 |
| PGSC0003DMT400034896 | Potato | plastid | 40.38 | 23.6 |
| PGSC0003DMT400034899 | Potato | plastid | 40.38 | 23.6 |
| PGSC0003DMT400021422 | Potato | plastid | 39.74 | 23.4 |
| PGSC0003DMT400043054 | Potato | plastid | 39.74 | 23.22 |
| PGSC0003DMT400010985 | Potato | plastid | 39.1 | 23.02 |
| PGSC0003DMT400015740 | Potato | plastid | 38.46 | 22.64 |
| PGSC0003DMT400022072 | Potato | plastid | 37.18 | 21.89 |
| PGSC0003DMT400049550 | Potato | plastid | 36.54 | 21.76 |
| PGSC0003DMT400022698 | Potato | plastid | 40.38 | 20.66 |
| PGSC0003DMT400068129 | Potato | plastid | 37.18 | 20.35 |
| PGSC0003DMT400011381 | Potato | plastid | 33.33 | 19.55 |
| PGSC0003DMT400021871 | Potato | plastid | 35.26 | 19.3 |
| PGSC0003DMT400019031 | Potato | plastid | 40.38 | 19.21 |
| PGSC0003DMT400032790 | Potato | plastid | 30.13 | 18.36 |
| PGSC0003DMT400032791 | Potato | plastid | 30.13 | 18.36 |
| PGSC0003DMT400025715 | Potato | plastid | 33.97 | 16.67 |
| PGSC0003DMT400034902 | Potato | plastid | 6.41 | 7.63 |
Protein Annotations
| Gene3D:1.10.3460.10 | MapMan:35.1 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 |
| GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 | GO:GO:0009987 | GO:GO:0015979 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | InterPro:IPR023329 |
| UniProt:M1B545 | PFAM:PF00504 | EnsemblPlantsGene:PGSC0003DMG400014386 | PGSC:PGSC0003DMG400014386 | EnsemblPlants:PGSC0003DMT400037285 | PANTHER:PTHR21649 |
| PANTHER:PTHR21649:SF57 | SUPFAM:SSF103511 | UniParc:UPI000295CD13 | : | : | : |
Description
Chlorophyll a-b binding protein 7, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400014386]
Coordinates
chr10:+:1193415..1196144
Molecular Weight (calculated)
17010.6 Da
IEP (calculated)
6.246
GRAVY (calculated)
0.096
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGAAGIFIP ELLTKIGILN TPSWYTAGEQ EYFTDTTTLF IVELVLIGWA EGRRWADIIK PGCVNTDPIF PNNKLTGTDV GYPGGLWFDP LGWGSGSPAK
101: IKELRTKEIK NGRLAMLAVM GAWFQHIYTG TGPIDNLFAH LADPGHATIF AAFSPK
101: IKELRTKEIK NGRLAMLAVM GAWFQHIYTG TGPIDNLFAH LADPGHATIF AAFSPK
001: MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK
Arabidopsis Description
LHCA2Photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SYW8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.