Factsheet for PGSC0003DMT400059995

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056050.2.1	Tomato	plastid	96.34	96.34
PGSC0003DMT400060313	Potato	plastid	93.9	93.9
GSMUA_Achr6P31940_001	Banana	plastid	84.55	86.31
Bra003198.1-P	Field mustard	plastid	83.33	85.06
CDY07517	Canola	plastid	83.33	85.06
CDX67613	Canola	plastid	83.33	85.06
CDX73435	Canola	plastid	82.93	84.65
Bra007109.1-P	Field mustard	plastid	82.93	84.65
CDX78277	Canola	plastid	82.93	84.65
AT3G54890.1	Thale cress	plastid	82.93	84.65
VIT_13s0019g04140.t01	Wine grape	plastid	83.33	84.02
KRH08384	Soybean	nucleus, plastid	83.74	83.74
KRH70044	Soybean	mitochondrion, nucleus, plastid	83.74	83.74
GSMUA_Achr2P06350_001	Banana	unclear	81.3	82.99
Os06t0320500-01	Rice	plastid	74.8	76.35
Zm00001d015385_P001	Maize	plastid	75.61	75.92
EES04597	Sorghum	plastid	75.61	75.92
TraesCS7D01G227300.1	Wheat	plastid	73.98	74.29
TraesCS7B01G192500.1	Wheat	plastid	73.98	74.29
TraesCS7A01G227100.1	Wheat	plastid	73.98	73.68
HORVU7Hr1G046320.2	Barley	plastid	73.17	63.16
Zm00001d024372_P001	Maize	plastid	45.53	47.26
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	26.02	40.0
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	26.02	40.0
PGSC0003DMT400037285	Potato	extracellular, vacuole	23.98	37.82
PGSC0003DMT400050232	Potato	plastid	38.21	37.45
PGSC0003DMT400083158	Potato	plastid	37.4	36.8
PGSC0003DMT400007514	Potato	plastid	38.62	36.54
PGSC0003DMT400034899	Potato	plastid	39.02	35.96
PGSC0003DMT400021422	Potato	plastid	38.62	35.85
PGSC0003DMT400021389	Potato	plastid	38.21	35.47
PGSC0003DMT400092927	Potato	plastid	38.21	35.47
PGSC0003DMT400021391	Potato	plastid	37.4	35.38
PGSC0003DMT400021392	Potato	plastid	37.4	35.38
PGSC0003DMT400021390	Potato	plastid	37.4	35.38
PGSC0003DMT400043054	Potato	plastid	38.21	35.21
PGSC0003DMT400034896	Potato	plastid	37.8	34.83
PGSC0003DMT400034897	Potato	plastid	36.99	34.73
PGSC0003DMT400034892	Potato	plastid	36.99	34.73
PGSC0003DMT400034893	Potato	plastid	36.99	34.73
PGSC0003DMT400034898	Potato	plastid	36.99	34.73
PGSC0003DMT400021871	Potato	plastid	39.43	34.04
PGSC0003DMT400034894	Potato	plastid	26.42	33.33
PGSC0003DMT400015740	Potato	plastid	35.77	33.21
PGSC0003DMT400049550	Potato	plastid	35.37	33.21
PGSC0003DMT400054836	Potato	plastid	36.59	32.97
PGSC0003DMT400022072	Potato	plastid	35.37	32.83
PGSC0003DMT400010985	Potato	plastid	35.37	32.83
PGSC0003DMT400020100	Potato	plastid	35.77	32.23
PGSC0003DMT400032790	Potato	plastid	32.93	31.64
PGSC0003DMT400032791	Potato	plastid	32.52	31.25
PGSC0003DMT400022698	Potato	plastid	38.21	30.82
PGSC0003DMT400068129	Potato	plastid	34.96	30.18
PGSC0003DMT400019031	Potato	plastid	37.8	28.35
PGSC0003DMT400034902	Potato	plastid	14.63	27.48
PGSC0003DMT400025715	Potato	plastid	34.96	27.04
PGSC0003DMT400011381	Potato	plastid	28.05	25.94

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	EntrezGene:102587257	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	UniProt:M1C516	PFAM:PF00504	EnsemblPlantsGene:PGSC0003DMG400023344	PGSC:PGSC0003DMG400023344	EnsemblPlants:PGSC0003DMT400059995
PANTHER:PTHR21649	PANTHER:PTHR21649:SF7	SUPFAM:SSF103511	UniParc:UPI0002964D9C	RefSeq:XP_006345801.1	SEG:seg

Description

Chlorophyll a-b binding protein 6A, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400023344]

Coordinates

chr5:-:51580476..51583002

Molecular Weight (calculated)

26622.0 Da

IEP (calculated)

5.316

GRAVY (calculated)

-0.063

Length

246 amino acids

Sequence
(BLAST)

001: MASNTLMSYG IAPVCPSILS ASKSKFVTAL PVSAGVTNDT SRFTMSADWM PGQPRPSYLD GSAPGDFGFD PLGFGEVPEN LERYKESELI HCRWAMLAVP
101: GIIVPEALGL GNWVKAQEWA AIPGGQATYL GQPVPWGTLP TILVIEFLAI AFVEHQRSME KDSEKKKYPG GAFDPLGYSK DPAKFEELKV KEIKNGRLAL
201: LAFVGFCVQQ SAYPGTGPLE NLATHLADPW HNNIGDVVIP KGIFPN

Best Arabidopsis Sequence Match ( AT3G54890.1 )
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N

Arabidopsis Description

LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.