Factsheet for PGSC0003DMT400020100

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g011280.1.1	Tomato	plastid	98.17	98.17
PGSC0003DMT400054836	Potato	plastid	91.94	91.94
AT1G61520.1	Thale cress	plastid	87.55	87.55
CDY12903	Canola	plastid	86.08	86.72
Bra027083.1-P	Field mustard	plastid	85.71	86.35
CDY57375	Canola	plastid	85.71	86.35
KRH74072	Soybean	mitochondrion, nucleus, plastid	87.18	86.23
CDY15020	Canola	plastid	85.35	85.98
KRH14048	Soybean	nucleus, plastid	86.81	85.87
VIT_15s0024g00040.t01	Wine grape	plastid	86.08	85.77
Bra031427.1-P	Field mustard	plastid	85.71	85.71
CDY03835	Canola	plastid	85.71	85.71
CDY47581	Canola	plastid	85.71	85.71
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	29.67	85.26
CDY26347	Canola	plastid	78.39	83.92
Zm00001d046786_P001	Maize	plastid	81.32	83.15
KXG20345	Sorghum	plastid	79.12	81.51
Os02t0197600-01	Rice	plastid	76.92	78.07
TraesCS6D01G152700.1	Wheat	golgi	75.09	76.21
TraesCS6B01G191500.1	Wheat	plastid	75.09	76.21
TraesCS6A01G159800.1	Wheat	plastid	75.09	76.21
Bra038584.1-P	Field mustard	plastid	76.19	72.47
PGSC0003DMT400037285	Potato	extracellular, vacuole	25.27	44.23
PGSC0003DMT400083158	Potato	plastid	37.0	40.4
PGSC0003DMT400007514	Potato	plastid	38.1	40.0
PGSC0003DMT400050232	Potato	plastid	35.9	39.04
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	22.71	38.75
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	22.71	38.75
PGSC0003DMT400059995	Potato	plastid	32.23	35.77
PGSC0003DMT400034896	Potato	plastid	34.8	35.58
PGSC0003DMT400021391	Potato	plastid	33.7	35.38
PGSC0003DMT400021422	Potato	plastid	34.07	35.09
PGSC0003DMT400060313	Potato	plastid	31.5	34.96
PGSC0003DMT400043054	Potato	plastid	34.07	34.83
PGSC0003DMT400092927	Potato	plastid	33.7	34.72
PGSC0003DMT400021389	Potato	plastid	33.7	34.72
PGSC0003DMT400021392	Potato	plastid	32.97	34.62
PGSC0003DMT400021390	Potato	plastid	32.97	34.62
PGSC0003DMT400034899	Potato	plastid	33.7	34.46
PGSC0003DMT400049550	Potato	plastid	32.97	34.35
PGSC0003DMT400034898	Potato	plastid	32.97	34.35
PGSC0003DMT400034897	Potato	plastid	32.97	34.35
PGSC0003DMT400022072	Potato	plastid	33.33	34.34
PGSC0003DMT400034893	Potato	plastid	32.6	33.97
PGSC0003DMT400034892	Potato	plastid	32.6	33.97
PGSC0003DMT400010985	Potato	plastid	32.6	33.58
PGSC0003DMT400015740	Potato	plastid	32.23	33.21
PGSC0003DMT400068129	Potato	plastid	34.07	32.63
PGSC0003DMT400011381	Potato	plastid	31.5	32.33
PGSC0003DMT400034894	Potato	plastid	21.98	30.77
PGSC0003DMT400034902	Potato	plastid	14.65	30.53
PGSC0003DMT400022698	Potato	plastid	34.07	30.49
PGSC0003DMT400032791	Potato	plastid	28.57	30.47
PGSC0003DMT400032790	Potato	plastid	28.21	30.08
PGSC0003DMT400021871	Potato	plastid	30.04	28.77
PGSC0003DMT400019031	Potato	plastid	33.7	28.05
PGSC0003DMT400025715	Potato	plastid	31.87	27.36

Protein Annotations

MapMan:1.1.4.1.3	Gene3D:1.10.3460.10	EntrezGene:102589781	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	UniProt:M1AD01	PFAM:PF00504	EnsemblPlantsGene:PGSC0003DMG400007787	PGSC:PGSC0003DMG400007787	EnsemblPlants:PGSC0003DMT400020100
PANTHER:PTHR21649	PANTHER:PTHR21649:SF14	SUPFAM:SSF103511	UniParc:UPI000295A2C2	RefSeq:XP_006350000.1	SEG:seg

Description

Chlorophyll a-b binding protein 8, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400007787]

Coordinates

chr12:+:1137096..1139573

Molecular Weight (calculated)

29230.3 Da

IEP (calculated)

9.107

GRAVY (calculated)

-0.029

Length

273 amino acids

Sequence
(BLAST)

001: MATQALISSS SIASSTEAAR QILGGRPFQS PIKKASLVVR ATATPPVKQG ANRPLWFASK QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPKWLAYGE
101: VINGRFAMLG VVGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYNYWA DGYTLFVLEM ALMGFAEHRR FQDWAKPGSM GKQYFLGLEK GLGGSGDPAY
201: PGGPFFNPLG FGKDEKSMKE LKLKEIKNGR LAMLGILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Best Arabidopsis Sequence Match ( AT1G61520.1 )
(BLAST)

001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Arabidopsis Description

LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.