CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046786_P001	Maize	plastid	96.6	95.88
GSMUA_Achr3P04110_001	Banana	plastid	83.02	80.29
Solyc10g007690.2.1	Tomato	plastid	82.64	80.22
CDY26347	Canola	plastid	76.98	80.0
TraesCS6D01G152700.1	Wheat	golgi	81.13	79.93
TraesCS6A01G159800.1	Wheat	plastid	81.13	79.93
Os02t0197600-01	Rice	plastid	81.13	79.93
PGSC0003DMT400054836	Potato	plastid	82.26	79.85
Bra027083.1-P	Field mustard	plastid	81.51	79.7
CDY12903	Canola	plastid	81.51	79.7
TraesCS6B01G191500.1	Wheat	plastid	80.75	79.55
AT1G61520.1	Thale cress	plastid	81.89	79.49
CDY57375	Canola	plastid	81.13	79.34
VIT_15s0024g00040.t01	Wine grape	plastid	81.89	79.2
Solyc12g011280.1.1	Tomato	plastid	81.51	79.12
CDY03835	Canola	plastid	81.51	79.12
PGSC0003DMT400020100	Potato	plastid	81.51	79.12
CDY47581	Canola	plastid	81.51	79.12
Bra031427.1-P	Field mustard	plastid	81.51	79.12
CDY15020	Canola	plastid	80.75	78.97
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	28.3	78.95
KRH14048	Soybean	nucleus, plastid	78.87	75.72
KRH74072	Soybean	mitochondrion, nucleus, plastid	78.87	75.72
Bra038584.1-P	Field mustard	plastid	74.72	68.99
KXG25214	Sorghum	plastid	38.49	40.64
EES07574	Sorghum	plastid	40.38	40.23
EER97145	Sorghum	extracellular, vacuole	24.53	38.01
KXG36552	Sorghum	plastid	36.98	37.26
KXG35708	Sorghum	plastid	38.11	36.73
EER97143	Sorghum	plastid	33.58	33.97
EES18693	Sorghum	plastid	33.58	33.58
EES01022	Sorghum	plastid	33.58	33.58
OQU90095	Sorghum	plastid	33.96	33.58
EES04597	Sorghum	plastid	30.94	33.47
OQU87124	Sorghum	plastid	33.21	33.33
EER93861	Sorghum	plastid	31.7	32.06
EES09551	Sorghum	plastid	33.96	31.91
OQU82564	Sorghum	plastid	27.92	29.02
EER96508	Sorghum	plastid	32.08	27.07
EER99537	Sorghum	plastid	29.06	26.74
KXG33266	Sorghum	extracellular	22.64	25.97

Protein Annotations

MapMan:1.1.4.1.3	Gene3D:1.10.3460.10	UniProt:A0A194YK35	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	EnsemblPlants:KXG20345	ProteinID:KXG20345	ProteinID:KXG20345.1	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF14	EnsemblPlantsGene:SORBI_3010G189300	SUPFAM:SSF103511	UniParc:UPI0001C80615	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:52995915..52997505

Molecular Weight (calculated)

28645.5 Da

IEP (calculated)

8.847

GRAVY (calculated)

-0.035

Length

265 amino acids

Sequence
(BLAST)

001: MAAQALLSRP AVQSAVSRSS ARKAPFVVRA SSSPPAKVCA QGADRQLWFA SKQSLSYLDG TLPGDYGFDP LGLSDPEGTG GFIEPKWLAY GEVINGRFAM
101: LGAAGAIAPE VFGKLGIIPP ETALPWFKTG VIPPAGTYNY WADSYTLFVF NMALMGFAEH RRLQDWYNPG SMGKQYFLGL EKFLAGSGDP SYPGGPLFNP
201: LGFGKTEKEM NELKLKEIKN GRLAMLAILG YFIQGLVTGV GPFQNLLDHL SDPVNNNVLT SLKFH

Best Arabidopsis Sequence Match ( AT1G61520.1 )
(BLAST)

001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Arabidopsis Description

LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.