CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005814_P002	Maize	plastid	89.45	90.77
Os09t0439500-01	Rice	plastid	77.82	81.06
TraesCS5A01G213000.1	Wheat	plastid	77.45	78.02
TraesCS5B01G210800.2	Wheat	cytosol, plastid	66.91	77.31
TraesCS5D01G219100.1	Wheat	plastid	77.09	77.09
HORVU5Hr1G062240.1	Barley	plastid	78.18	75.44
VIT_11s0016g00730.t01	Wine grape	plastid	66.91	71.04
KRH37524	Soybean	plastid	66.91	70.77
Solyc12g009200.1.1	Tomato	nucleus, plastid	66.55	70.38
PGSC0003DMT400007514	Potato	plastid	66.18	70.0
KRH12566	Soybean	plastid	65.82	69.62
CDX83783	Canola	plastid	64.36	66.54
Bra016522.1-P	Field mustard	plastid	64.0	66.17
CDX96677	Canola	plastid	64.0	66.17
AT1G19150.1	Thale cress	plastid	63.64	64.81
GSMUA_Achr9P18200_001	Banana	plastid	30.55	61.31
KXG36552	Sorghum	plastid	54.91	57.41
KXG25214	Sorghum	plastid	41.45	45.42
EES07574	Sorghum	plastid	39.27	40.6
EER97145	Sorghum	extracellular, vacuole	24.0	38.6
KXG20345	Sorghum	plastid	36.73	38.11
EES04597	Sorghum	plastid	31.64	35.51
OQU82564	Sorghum	plastid	32.0	34.51
EER97143	Sorghum	plastid	32.36	33.97
EES18693	Sorghum	plastid	32.73	33.96
EES01022	Sorghum	plastid	32.0	33.21
OQU87124	Sorghum	plastid	31.27	32.58
EER99537	Sorghum	plastid	33.09	31.6
EER93861	Sorghum	plastid	28.73	30.15
OQU90095	Sorghum	plastid	28.73	29.48
EER96508	Sorghum	plastid	32.73	28.66
EES09551	Sorghum	plastid	28.73	28.01
KXG33266	Sorghum	extracellular	19.27	22.94

Protein Annotations

MapMan:1.1.4.1.6	Gene3D:1.10.3460.10	UniProt:A0A1B6QCQ7	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507
GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628
GO:GO:0009637	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010114
GO:GO:0010218	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EnsemblPlants:KXG35708	ProteinID:KXG35708
ProteinID:KXG35708.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF5	EnsemblPlantsGene:SORBI_3002G215000	SUPFAM:SSF103511
UniParc:UPI0001C80DF7	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:60708921..60710984

Molecular Weight (calculated)

30080.0 Da

IEP (calculated)

8.228

GRAVY (calculated)

-0.127

Length

275 amino acids

Sequence
(BLAST)

001: MALPSAGSFA ACSLQPRVSI RACHAPRPPP HLQPGAAAAV SSARTRQQRR ANATKGGVST VCEPLGPDRP VWFPGKPAPP WLDGSLPGDF GFDPLGLGSD
101: PESLRWFAQA ELMHGRWAML AAAGILIPDL LARWGFIDAG YSWFDAGSRE YFADPWTLFI SQMALMGWAE SRRWADILKP GCVDIEPRFP NRKNPVPDVG
201: YPGGIWFDWA NWGRGSPEPV MVLRTKEIKN GRLAMLAFVG FWFQAVYTGQ GPIDNLLAHL ADPGHCNIFS AFTSH

Best Arabidopsis Sequence Match ( AT1G19150.1 )
(BLAST)

001: MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH

Arabidopsis Description

LHCA6Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.