Factsheet for VIT_11s0016g00730.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007514	Potato	plastid	82.63	82.31
KRH37524	Soybean	plastid	80.69	80.38
Solyc12g009200.1.1	Tomato	nucleus, plastid	80.69	80.38
KRH12566	Soybean	plastid	80.31	80.0
GSMUA_Achr9P18200_001	Banana	plastid	40.93	77.37
Bra016522.1-P	Field mustard	plastid	77.22	75.19
CDX83783	Canola	plastid	77.22	75.19
CDX96677	Canola	plastid	77.22	75.19
AT1G19150.1	Thale cress	plastid	76.83	73.7
Os09t0439500-01	Rice	plastid	73.75	72.35
TraesCS5B01G210800.2	Wheat	cytosol, plastid	64.86	70.59
Zm00001d005814_P002	Maize	plastid	72.97	69.74
KXG35708	Sorghum	plastid	71.04	66.91
TraesCS5A01G213000.1	Wheat	plastid	69.11	65.57
TraesCS5D01G219100.1	Wheat	plastid	69.5	65.45
HORVU5Hr1G062240.1	Barley	plastid	70.66	64.21
VIT_01s0010g03620.t01	Wine grape	plastid	56.76	54.24
VIT_17s0000g06350.t01	Wine grape	plastid	44.02	45.24
VIT_18s0001g10550.t01	Wine grape	plastid	39.77	39.02
VIT_15s0024g00040.t01	Wine grape	plastid	40.54	38.32
VIT_13s0019g04140.t01	Wine grape	plastid	35.52	37.7
VIT_10s0003g02900.t01	Wine grape	plastid	35.91	35.23
VIT_10s0003g02890.t01	Wine grape	plastid	35.52	34.85
VIT_12s0028g00320.t01	Wine grape	plastid	36.29	34.81
VIT_12s0055g01110.t01	Wine grape	plastid	34.36	34.63
VIT_19s0014g00160.t01	Wine grape	plastid	35.52	34.46
VIT_07s0005g02220.t01	Wine grape	plastid	33.98	33.46
VIT_19s0014g03660.t01	Wine grape	plastid	33.2	32.33
VIT_00s0181g00200.t01	Wine grape	plastid	33.2	31.97
VIT_00s0181g00180.t01	Wine grape	plastid	33.2	31.97
VIT_12s0057g00630.t01	Wine grape	plastid	32.05	31.32
VIT_08s0007g02190.t01	Wine grape	plastid	34.75	26.32
VIT_18s0122g00430.t01	Wine grape	plastid	33.59	26.28
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	32.82	21.14

Protein Annotations

MapMan:1.1.4.1.6	Gene3D:1.10.3460.10	EntrezGene:100243962	wikigene:100243962	EntrezGene:100268126	EMBL:AM453785
ProteinID:CAN69989	ProteinID:CAN69989.1	ProteinID:CBI27778	ProteinID:CBI27778.3	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	UniProt:D7TCC0	EMBL:FN595756	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941
GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EntrezGene:LOC100243962	wikigene:LOC100243962
EntrezGene:LOC100268126	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF5	SUPFAM:SSF103511	TIGR:TC62550
UniParc:UPI000198429C	ArrayExpress:VIT_11s0016g00730	EnsemblPlantsGene:VIT_11s0016g00730	EnsemblPlants:VIT_11s0016g00730.t01	unigene:Vvi.6794	RefSeq:XP_002277280
RefSeq:XP_002277280.1	:	:	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:D7TCC0]

Coordinates

chr11:+:701298..703546

Molecular Weight (calculated)

28663.6 Da

IEP (calculated)

5.321

GRAVY (calculated)

0.024

Length

259 amino acids

Sequence
(BLAST)

001: MALSIASTAF SSLPTREVSS KHFPRKLTTW LPGRVRLNAT KGVSSVCEPL PPDRPLWFPG SSPPEWLDGS LPGDFGFDPL GLGSDPELLR WFAQAELMHS
101: RWAMLAVAGI LIPECLERLG FIENFSWYDA GAQEFFADPT TLFVVQLALM GWVEGRRWAD LINPGCVDIQ LTFPNKAKPK PDVGYPGGLW FDPFMWGRGS
201: PEPVMVLRTK EIKNGRLAML AFVGFCFQAI YTGEGPIENL MAHIADPGHC NVFSAFTSQ

Best Arabidopsis Sequence Match ( AT1G19150.1 )
(BLAST)

001: MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH

Arabidopsis Description

LHCA6Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.