Factsheet for Os09t0439500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005814_P002	Maize	plastid	81.82	79.7
KXG35708	Sorghum	plastid	81.06	77.82
TraesCS5A01G213000.1	Wheat	plastid	79.55	76.92
TraesCS5B01G210800.2	Wheat	cytosol, plastid	69.32	76.89
TraesCS5D01G219100.1	Wheat	plastid	79.55	76.36
KRH12566	Soybean	plastid	72.73	73.85
VIT_11s0016g00730.t01	Wine grape	plastid	72.35	73.75
KRH37524	Soybean	plastid	72.35	73.46
HORVU5Hr1G062240.1	Barley	plastid	79.17	73.33
PGSC0003DMT400007514	Potato	plastid	69.7	70.77
Solyc12g009200.1.1	Tomato	nucleus, plastid	69.32	70.38
GSMUA_Achr9P18200_001	Banana	plastid	35.61	68.61
CDX83783	Canola	plastid	68.56	68.05
Bra016522.1-P	Field mustard	plastid	68.18	67.67
CDX96677	Canola	plastid	68.18	67.67
AT1G19150.1	Thale cress	plastid	68.56	67.04
Os07t0577600-01	Rice	plastid	55.68	55.89
Os08t0435900-01	Rice	mitochondrion	40.53	43.85
Os02t0197600-01	Rice	plastid	40.91	40.15
Os02t0764500-01	Rice	plastid	39.02	39.46
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	36.36	38.1
Os06t0320500-01	Rice	plastid	33.33	36.51
Os01t0600900-02	Rice	plastid	33.71	34.1
Os09t0346500-04	Rice	plastid	33.33	33.21
Os01t0720500-01	Rice	plastid	33.33	33.21
Os07t0562700-01	Rice	extracellular, plastid	32.58	32.33
Os07t0558400-01	Rice	plasma membrane, plastid	34.09	31.03
Os03t0592500-01	Rice	extracellular	30.3	30.42
Os11t0242800-01	Rice	plastid	29.55	27.56
Os09t0296800-01	Rice	plastid	31.82	26.17

Protein Annotations

MapMan:1.1.4.1.6	Gene3D:1.10.3460.10	EntrezGene:4347166	EMBL:AK067780	ProteinID:BAD36085.1	ProteinID:BAD36143.1
ProteinID:BAF25189.1	ProteinID:BAT08276.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009637
GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010114	GO:GO:0010218
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EnsemblPlantsGene:Os09g0439500	EnsemblPlants:Os09t0439500-01	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF5	UniProt:Q69P91	SUPFAM:SSF103511	UniParc:UPI0000403992	RefSeq:XP_015612359.1

Description

Similar to Type II chlorophyll a/b binding protein from photosystem I precursor. (Os09t0439500-01)

Coordinates

chr9:+:16287916..16290736

Molecular Weight (calculated)

28903.6 Da

IEP (calculated)

6.237

GRAVY (calculated)

-0.072

Length

264 amino acids

Sequence
(BLAST)

001: MALPSGSFAA CSIQPRVRAA LRAPTLPSQN AAVARMAGHR AGATKGGVSA VCEPLGPDRP LWFPGSSPPP WLDGSLPGDF GFDPLGLGSD PELLRWFAQA
101: ELMHSRWAML AVAGILVPEV LEKWGFMEDY SWIDAGARDY FADPWTLFVS QMALMGWAEG RRWADYLNPG CVAVEPRLPN RRNPVPDVGY PGGLWFDWGN
201: WGRGSPEPVM VLRTKEIKNG RLAMLAFVGF WFQAVYTGEG PIDNLLHHLA DPGHCNVFSA FTSH

Best Arabidopsis Sequence Match ( AT1G19150.1 )
(BLAST)

001: MAFAIASALT STLTLSTSRV QNPTQRRPHV ASTSSTGGRL MRERLVVVRA GKEVSSVCEP LPPDRPLWFP GSSPPEWLDG SLPGDFGFDP LGLGSDPDTL
101: KWFAQAELIH SRWAMLAVTG IIIPECLERL GFIENFSWYD AGSREYFADS TTLFVAQMVL MGWAEGRRWA DLIKPGSVDI EPKYPHKVNP KPDVGYPGGL
201: WFDFMMWGRG SPEPVMVLRT KEIKNGRLAM LAFLGFCFQA TYTSQDPIEN LMAHLADPGH CNVFSAFTSH

Arabidopsis Description

LHCA6Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.