Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 5
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032197_P001 | Maize | plastid | 89.75 | 88.66 |
| Zm00001d050403_P001 | Maize | plastid | 88.52 | 88.52 |
| KXG25214 | Sorghum | plastid | 90.98 | 88.45 |
| TraesCS5A01G229300.1 | Wheat | mitochondrion, plastid | 82.38 | 82.04 |
| TraesCS5B01G227900.1 | Wheat | plastid | 82.38 | 82.04 |
| HORVU5Hr1G066280.1 | Barley | plastid | 81.97 | 81.63 |
| TraesCS5D01G238300.1 | Wheat | mitochondrion, plastid | 81.97 | 81.63 |
| GSMUA_Achr2P14960_001 | Banana | plastid | 80.74 | 78.49 |
| KRH63318 | Soybean | plastid | 80.74 | 78.17 |
| KRH54568 | Soybean | nucleus, plastid | 80.33 | 77.78 |
| GSMUA_Achr4P24090_001 | Banana | unclear | 79.51 | 76.98 |
| VIT_17s0000g06350.t01 | Wine grape | plastid | 79.1 | 76.59 |
| Solyc06g069730.2.1 | Tomato | plastid | 77.87 | 76.0 |
| PGSC0003DMT400083158 | Potato | plastid | 77.87 | 76.0 |
| Solyc03g115900.2.1 | Tomato | plastid | 76.64 | 74.5 |
| PGSC0003DMT400050232 | Potato | plastid | 76.64 | 74.5 |
| Bra018144.1-P | Field mustard | plastid | 76.64 | 74.21 |
| CDX99044 | Canola | plastid | 76.64 | 74.21 |
| CDY47410 | Canola | plastid | 76.64 | 74.21 |
| AT3G47470.1 | Thale cress | plastid | 75.82 | 73.71 |
| Os07t0577600-01 | Rice | plastid | 50.0 | 46.39 |
| Os09t0439500-01 | Rice | plastid | 43.85 | 40.53 |
| Os02t0764500-01 | Rice | plastid | 43.03 | 40.23 |
| Os02t0197600-01 | Rice | plastid | 42.21 | 38.29 |
| Os06t0320500-01 | Rice | plastid | 36.48 | 36.93 |
| Os07t0558400-01 | Rice | plasma membrane, plastid | 36.07 | 30.34 |
| Os07t0562700-01 | Rice | extracellular, plastid | 32.79 | 30.08 |
| Os01t0600900-02 | Rice | plastid | 31.97 | 29.89 |
| Os09t0346500-04 | Rice | plastid | 31.97 | 29.43 |
| Os03t0592500-01 | Rice | extracellular | 31.56 | 29.28 |
| Os01t0720500-01 | Rice | plastid | 31.56 | 29.06 |
| Os04t0457000-01 | Rice | extracellular, plasma membrane, plastid | 29.51 | 28.57 |
| Os11t0242800-01 | Rice | plastid | 29.1 | 25.09 |
| Os09t0296800-01 | Rice | plastid | 30.33 | 23.05 |
Protein Annotations
| MapMan:1.1.4.1.4 | Gene3D:1.10.3460.10 | EntrezGene:4345663 | EMBL:AK060222 | EMBL:AK067712 | EMBL:AK104416 |
| EMBL:AK104499 | ProteinID:BAD10636.1 | ProteinID:BAF23798.1 | ProteinID:BAT05591.1 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind |
| InterPro:Chlorophyll_a/b-bd_dom_sf | ProteinID:EAZ42851.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009416 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009941 | GO:GO:0009987 |
| GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 |
| GO:GO:0019538 | GO:GO:0031409 | InterPro:IPR023329 | EMBL:KX434726 | EnsemblPlantsGene:Os08g0435900 | EnsemblPlants:Os08t0435900-01 |
| PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF4 | UniProt:Q6YWJ7 | SUPFAM:SSF103511 | UniParc:UPI000023B12B |
| RefSeq:XP_015649730.1 | : | : | : | : | : |
Description
chlorophyll a/b binding protein, light-harvesting chlorophyll a/b binding protein, cab gene from Norin 8Similar to LHC I type IV chlorophyll binding protein (Fragment). (Os08t0435900-01);Similar to LHC I type IV chlorophyll binding protein (Fragment). (Os08t0435900-03);Non-protein coding transcript. (Os08t0435900-04)
Coordinates
chr8:-:21171332..21172654
Molecular Weight (calculated)
26957.3 Da
IEP (calculated)
7.058
GRAVY (calculated)
-0.139
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVTARTPV AALRSSASLK STFLGQSSTR LARAPTTRRN VRAEAKGEWL PGLPSPTYLN GSLPGDNGFD PLGLAEDPEN LRWFVQAELV NGRWAMLGVA
101: GMLLPEVLTK IGLIDAPQWY DAGKATYFAS SSTLFVIEFI LFHYVEIRRW QDIKNPGCVN QDPIFKSYSL PPHECGYPGS VFNPLNFEPT LEAKEKELAN
201: GRLAMLAFLG FLVQHNVTQK GPFDNLLQHL SDPWHNTIIQ TLSG
101: GMLLPEVLTK IGLIDAPQWY DAGKATYFAS SSTLFVIEFI LFHYVEIRRW QDIKNPGCVN QDPIFKSYSL PPHECGYPGS VFNPLNFEPT LEAKEKELAN
201: GRLAMLAFLG FLVQHNVTQK GPFDNLLQHL SDPWHNTIIQ TLSG
001: MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N
Arabidopsis Description
LHCA4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VEE6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.