Factsheet for GSMUA_Achr2P14960_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P24090_001	Banana	unclear	91.24	90.87
VIT_17s0000g06350.t01	Wine grape	plastid	89.24	88.89
KRH54568	Soybean	nucleus, plastid	86.45	86.11
Solyc03g115900.2.1	Tomato	plastid	86.06	86.06
KRH63318	Soybean	plastid	86.06	85.71
PGSC0003DMT400050232	Potato	plastid	85.66	85.66
Bra018144.1-P	Field mustard	plastid	84.86	84.52
CDX99044	Canola	plastid	84.86	84.52
CDY47410	Canola	plastid	84.86	84.52
Zm00001d050403_P001	Maize	plastid	81.67	84.02
Solyc06g069730.2.1	Tomato	plastid	83.27	83.6
AT3G47470.1	Thale cress	plastid	82.87	82.87
PGSC0003DMT400083158	Potato	plastid	82.47	82.8
Zm00001d032197_P001	Maize	plastid	80.88	82.19
KXG25214	Sorghum	plastid	80.88	80.88
Os08t0435900-01	Rice	mitochondrion	78.49	80.74
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	74.9	76.73
TraesCS5B01G227900.1	Wheat	plastid	74.9	76.73
HORVU5Hr1G066280.1	Barley	plastid	74.9	76.73
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	74.5	76.33
GSMUA_Achr6P20660_001	Banana	mitochondrion	38.25	46.83
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	43.82	44.18
GSMUA_Achr2P06350_001	Banana	unclear	39.04	40.66
GSMUA_Achr7P13020_001	Banana	plastid	43.43	40.07
GSMUA_Achr6P31940_001	Banana	plastid	38.25	39.83
GSMUA_Achr9P18200_001	Banana	plastid	21.51	39.42
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	22.71	39.04
GSMUA_Achr3P04110_001	Banana	plastid	41.43	37.96
GSMUA_Achr9P02810_001	Banana	plastid	34.66	35.8
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	34.66	35.51
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	12.35	32.63
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	17.13	32.33
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	17.13	32.33
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	32.27	30.34
GSMUA_Achr4P07890_001	Banana	plastid	19.12	30.19
GSMUA_Achr4P33040_001	Banana	plastid, unclear	31.47	29.92
GSMUA_AchrUn_...	Banana	plastid	27.49	29.87
GSMUA_Achr6P12670_001	Banana	plasma membrane	32.67	29.39
GSMUA_Achr1P08770_001	Banana	plastid, unclear	27.89	29.05
GSMUA_Achr10P...	Banana	plastid	32.67	28.47
GSMUA_Achr3P02780_001	Banana	plastid	31.08	26.9
GSMUA_Achr10P...	Banana	unclear	15.94	26.85
GSMUA_Achr9P27480_001	Banana	mitochondrion	30.68	23.91

Protein Annotations

MapMan:1.1.4.1.4	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr2G14960_001
EnsemblPlants:GSMUA_Achr2P14960_001	EnsemblPlants:GSMUA_Achr2T14960_001	InterPro:IPR023329	UniProt:M0S837	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF4	SUPFAM:SSF103511	UniParc:UPI000296A02A	SEG:seg	:	:

Description

Chlorophyll a-b binding protein 4, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr2G14960_001]

Coordinates

chr2:-:16494330..16495573

Molecular Weight (calculated)

27736.1 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.149

Length

251 amino acids

Sequence
(BLAST)

001: MATVATQASV AALRPCSSRS RFMTGSSGKL AREFAARSSP SSSYRSLKVE AKKGEWLPGL ASPTYLDGSL PGDNGFDPLG LAEDPENLRW YVQAELVNGR
101: WAMLGVAGML LPEVFTKIGI INAPQWYDAG KAEYFASSST LFVIEFILFH YVEIRRWQDI KYPGSVNQDP IFKNYSLPPN EVGYPGGIFN PLNFAPTLEA
201: KEKELANGRL AMLAFLGFII QHNVTGKGPF ENLLQHLSDP WHNTIIQTFQ G

Best Arabidopsis Sequence Match ( AT3G47470.1 )
(BLAST)

001: MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N

Arabidopsis Description

LHCA4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VEE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.