Factsheet for Bra018144.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47410	Canola	plastid	100.0	100.0
CDX99044	Canola	plastid	100.0	100.0
AT3G47470.1	Thale cress	plastid	94.84	95.22
Solyc06g069730.2.1	Tomato	plastid	86.11	86.8
PGSC0003DMT400050232	Potato	plastid	86.11	86.45
Solyc03g115900.2.1	Tomato	plastid	86.11	86.45
PGSC0003DMT400083158	Potato	plastid	85.71	86.4
VIT_17s0000g06350.t01	Wine grape	plastid	85.32	85.32
GSMUA_Achr4P24090_001	Banana	unclear	85.32	85.32
GSMUA_Achr2P14960_001	Banana	plastid	84.52	84.86
KRH54568	Soybean	nucleus, plastid	84.52	84.52
KRH63318	Soybean	plastid	84.52	84.52
Zm00001d032197_P001	Maize	plastid	77.38	78.95
Zm00001d050403_P001	Maize	plastid	76.19	78.69
KXG25214	Sorghum	plastid	76.98	77.29
Os08t0435900-01	Rice	mitochondrion	74.21	76.64
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	73.81	75.92
HORVU5Hr1G066280.1	Barley	plastid	73.81	75.92
TraesCS5B01G227900.1	Wheat	plastid	73.81	75.92
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	73.41	75.51
Bra014433.1-P	Field mustard	plastid	49.21	48.44
Bra003451.1-P	Field mustard	plastid	48.41	47.1
Bra014048.1-P	Field mustard	mitochondrion, plastid	42.46	41.47
Bra016522.1-P	Field mustard	plastid	41.67	39.47
Bra007109.1-P	Field mustard	plastid	35.71	37.34
Bra003198.1-P	Field mustard	plastid	35.71	37.34
Bra027083.1-P	Field mustard	plastid	40.08	37.27
Bra031427.1-P	Field mustard	plastid	40.08	37.0
Bra038584.1-P	Field mustard	plastid	38.89	34.15
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	21.43	33.54
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	21.43	33.54
Bra029732.1-P	Field mustard	plastid	36.51	31.94
Bra030182.1-P	Field mustard	plastid	33.33	31.46
Bra030181.1-P	Field mustard	plastid	33.33	31.46
Bra028906.1-P	Field mustard	plastid	35.71	31.25
Bra022976.1-P	Field mustard	plastid	32.94	31.2
Bra010807.1-P	Field mustard	plastid	32.54	30.71
Bra033022.1-P	Field mustard	plastid	31.35	30.62
Bra002999.1-P	Field mustard	plastid	32.14	30.57
Bra013183.1-P	Field mustard	plastid	32.14	30.57
Bra004989.1-P	Field mustard	plastid	33.33	30.43
Bra000708.1-P	Field mustard	plastid	33.73	30.36
Bra039070.1-P	Field mustard	plastid	31.75	30.19
Bra025297.1-P	Field mustard	plastid	31.75	30.08
Bra005425.1-P	Field mustard	plastid	31.75	30.08
Bra037913.1-P	Field mustard	plastid	32.94	29.54
Bra026745.1-P	Field mustard	plastid	29.76	28.96
Bra026099.1-P	Field mustard	plastid	29.37	28.68
Bra016650.1-P	Field mustard	plastid	28.97	28.4
Bra008265.1-P	Field mustard	plastid	31.75	24.69

Protein Annotations

MapMan:1.1.4.1.4	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra018144	EnsemblPlants:Bra018144.1	EnsemblPlants:Bra018144.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009644
GO:GO:0009645	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
GO:GO:0019904	GO:GO:0080167	InterPro:IPR023329	UniProt:M4DNQ7	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF4	SUPFAM:SSF103511	UniParc:UPI000253F45C	SEG:seg	:	:

Description

AT3G47470 (E=2e-131) LHCA4, CAB4 | LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding

Coordinates

chrA06:+:10589152..10590392

Molecular Weight (calculated)

27807.2 Da

IEP (calculated)

6.961

GRAVY (calculated)

-0.133

Length

252 amino acids

Sequence
(BLAST)

001: MATVTTQASA SIFRPCTSKP RFLTGSSGRL NRDLSFKSIG SSSSKTASFK VEAKKGEWLP GLASPGYLNG SLAGDNGFDP LGLAEDPENL KWFIQAELVN
101: GRWAMLGVAG MLLPEVFTKI GIINVPEWYD AGKEQYFASS STLFVIEFIL FHYVEIRRWQ DIKNPGSVNQ DPIFKQYSLP PNEVGYPGGI FNPLNFAPTL
201: EAKEKELANG RLAMLAFLGF VIQHNVTGKG PFENLLQHLS DPWHNTIVQT FS

Best Arabidopsis Sequence Match ( AT3G47470.1 )
(BLAST)

001: MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N

Arabidopsis Description

LHCA4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VEE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.