Factsheet for Bra021909.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra003782.1-P
Bra004709.1-P
Bra005827.1-P
Bra011734.1-P
Bra015885.1-P
Bra018126.1-P
Bra032697.1-P
Bra034882.1-P
Bra037607.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29910.1	Bra003782.1-P	AT1G74890.1	18642946
AT1G29910.1	Bra015885.1-P	AT1G74890.1	18642946
AT1G29910.1	Bra018126.1-P	AT3G47620.1	21798944
AT1G29920.1	Bra003782.1-P	AT1G74890.1	18642946
AT1G29920.1	Bra015885.1-P	AT1G74890.1	18642946
AT1G29920.1	Bra037607.1-P	AT3G44880.1	22366162
AT1G29920.1	Bra032697.1-P	AT4G13250.1	22366162
AT1G29920.1	Bra034882.1-P	AT4G13250.1	22366162
AT1G29920.1	Bra011734.1-P	AT4G37000.1	22366162
AT1G29920.1	Bra005827.1-P	AT5G04900.1	22366162
AT1G29930.1	Bra000267.1-P	AT2G42580.1	19000166
AT1G29930.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	98.76	98.76
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	79.5	96.24
CDX84647	Canola	plastid	100.0	60.53
CDX79562	Canola	plastid	100.0	60.53
Bra022976.1-P	Field mustard	plastid	100.0	60.53
Bra030181.1-P	Field mustard	plastid	100.0	60.3
Bra010807.1-P	Field mustard	plastid	99.38	59.93
AT2G34420.1	Thale cress	plastid	98.14	59.62
AT2G34430.1	Thale cress	plastid	98.14	59.4
Bra005425.1-P	Field mustard	plastid	98.14	59.4
Bra030182.1-P	Field mustard	plastid	98.14	59.18
AT1G29920.1	Thale cress	plastid	97.52	58.8
AT1G29910.1	Thale cress	plastid	97.52	58.8
AT1G29930.1	Thale cress	plastid	97.52	58.8
Bra033022.1-P	Field mustard	plastid	83.23	51.94
Bra013183.1-P	Field mustard	plastid	84.47	51.32
Bra039070.1-P	Field mustard	plastid	83.85	50.94
Bra025297.1-P	Field mustard	plastid	83.85	50.75
Bra002999.1-P	Field mustard	plastid	77.02	46.79
Bra037913.1-P	Field mustard	plastid	48.45	27.76
Bra007109.1-P	Field mustard	plastid	40.99	27.39
Bra003198.1-P	Field mustard	plastid	40.99	27.39
Bra000708.1-P	Field mustard	plastid	47.2	27.14
Bra014433.1-P	Field mustard	plastid	37.89	23.83
Bra003451.1-P	Field mustard	plastid	37.27	23.17
Bra008265.1-P	Field mustard	plastid	46.58	23.15
Bra028906.1-P	Field mustard	plastid	40.37	22.57
Bra029732.1-P	Field mustard	plastid	40.37	22.57
Bra027083.1-P	Field mustard	plastid	37.89	22.51
Bra031427.1-P	Field mustard	plastid	37.89	22.34
Bra018144.1-P	Field mustard	plastid	33.54	21.43
Bra014048.1-P	Field mustard	mitochondrion, plastid	34.16	21.32
Bra016522.1-P	Field mustard	plastid	34.78	21.05
Bra038584.1-P	Field mustard	plastid	37.27	20.91
Bra004989.1-P	Field mustard	plastid	34.16	19.93
Bra016650.1-P	Field mustard	plastid	30.43	19.07
Bra026099.1-P	Field mustard	plastid	29.81	18.6
Bra026745.1-P	Field mustard	plastid	29.81	18.53

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra021909	EnsemblPlants:Bra021909.1	EnsemblPlants:Bra021909.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M4DZG2	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF25	SUPFAM:SSF103511	UniParc:UPI00025438C5	:	:	:

Description

AT2G34430 (E=8e-090) LHB1B1, LHCB1.4 | LHB1B1; chlorophyll binding

Coordinates

chrA04:-:15158689..15159174

Molecular Weight (calculated)

17076.6 Da

IEP (calculated)

4.428

GRAVY (calculated)

0.271

Length

161 amino acids

Sequence
(BLAST)

001: MLGALGCVFP ELLARNGVKF GEAVWFKAGS QIFSEGGLDY LGNPSLVHAQ SILAIWATQV ILMGAVEGYR VAGEGPLGEA EDLLYPGGSF DPLGLATDPE
101: AFAELKVKEI KNGRLAMFSM FGFFVQAIVT GKGPLENLAD HLADPVNNNA WAFATNFVPG K

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.