Factsheet for Bra029732.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44667	Canola	plastid	100.0	100.0
CDY53084	Canola	plastid	98.61	98.27
AT3G08940.2	Thale cress	plastid	95.83	96.17
Bra028906.1-P	Field mustard	plastid	94.1	94.1
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	46.88	92.47
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	37.85	90.83
Solyc09g014520.2.1	Tomato	plastid	86.46	87.37
PGSC0003DMT400021871	Potato	plastid	85.42	86.32
KRH75874	Soybean	mitochondrion, nucleus, plastid	86.81	86.21
KRH65776	Soybean	nucleus, plastid	86.46	85.86
EER99537	Sorghum	plastid	84.03	84.03
Os07t0558400-01	Rice	plasma membrane, plastid	84.03	83.45
Zm00001d006587_P001	Maize	plastid	83.33	82.47
Zm00001d021763_P001	Maize	plastid	83.33	82.47
TraesCS2A01G206200.1	Wheat	plastid	81.25	81.82
TraesCS2B01G233400.1	Wheat	plastid	81.25	81.82
TraesCS2D01G209900.1	Wheat	plastid	81.25	81.82
VIT_08s0007g02190.t01	Wine grape	plastid	83.33	70.18
HORVU5Hr1G013200.1	Barley	plastid	68.4	69.61
Bra004989.1-P	Field mustard	plastid	65.62	68.48
Bra007109.1-P	Field mustard	plastid	35.76	42.74
Bra003198.1-P	Field mustard	plastid	35.76	42.74
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	22.57	40.37
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	22.57	40.37
Bra022976.1-P	Field mustard	plastid	34.03	36.84
Bra030181.1-P	Field mustard	plastid	34.03	36.7
Bra030182.1-P	Field mustard	plastid	34.03	36.7
Bra018144.1-P	Field mustard	plastid	31.94	36.51
Bra005425.1-P	Field mustard	plastid	33.68	36.47
Bra010807.1-P	Field mustard	plastid	33.68	36.33
Bra014433.1-P	Field mustard	plastid	29.86	33.59
Bra003451.1-P	Field mustard	plastid	30.21	33.59
Bra014048.1-P	Field mustard	mitochondrion, plastid	29.86	33.33
Bra013183.1-P	Field mustard	plastid	30.56	33.21
Bra026745.1-P	Field mustard	plastid	29.86	33.2
Bra033022.1-P	Field mustard	plastid	29.51	32.95
Bra026099.1-P	Field mustard	plastid	29.17	32.56
Bra002999.1-P	Field mustard	plastid	29.86	32.45
Bra039070.1-P	Field mustard	plastid	29.86	32.45
Bra025297.1-P	Field mustard	plastid	29.86	32.33
Bra016522.1-P	Field mustard	plastid	29.86	32.33
Bra016650.1-P	Field mustard	plastid	28.82	32.3
Bra027083.1-P	Field mustard	plastid	29.51	31.37
Bra000708.1-P	Field mustard	plastid	30.21	31.07
Bra031427.1-P	Field mustard	plastid	28.82	30.4
Bra037913.1-P	Field mustard	plastid	29.51	30.25
Bra008265.1-P	Field mustard	plastid	30.56	27.16
Bra038584.1-P	Field mustard	plastid	26.39	26.48

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra029732	EnsemblPlants:Bra029732.1	EnsemblPlants:Bra029732.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009637	GO:GO:0009719	GO:GO:0009735	GO:GO:0009765
GO:GO:0009941	GO:GO:0009987	GO:GO:0010114	GO:GO:0010218	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M4ELR3
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF6	SUPFAM:SSF103511	UniParc:UPI0000E64EC1	SEG:seg

Description

AT3G08940 (E=2e-147) LHCB4.2 | LHCB4.2 (light harvesting complex PSII); chlorophyll binding

Coordinates

chrA05:-:22477597..22478541

Molecular Weight (calculated)

31116.0 Da

IEP (calculated)

5.727

GRAVY (calculated)

-0.065

Length

288 amino acids

Sequence
(BLAST)

001: MAATSTAAAA SSIMGTRVVS DINSGSSRFT ARFGFGTKKA AAPKKAKTVI SDRPLWFPGA KSPEYLDGSL VGDYGFDPFG LGKPAEYLQF DLDSLDQNLA
101: KNIAGDVIGT RTEAADPKST PFQPYSEVFG LQRFRECELI HGRWAMLATL GALSVEWLTG VTWQDAGKVE LVDGSSYLGQ PLPFSISTLI WIEVLVIGYI
201: EFQRNAELDS EKRLYPGGKF FDPLGLASDP EKKAQLQLAE IKHARLAMVA FLGFAVQAAA TGKGPLNNWA THLSDPLHTT IIDTFSSS

Best Arabidopsis Sequence Match ( AT3G08940.2 )
(BLAST)

001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS

Arabidopsis Description

LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.