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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 22160430
golgi: 25769308
msms PMID: 22160430 doi
AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G01530.1 TraesCS3A01G099400.1 AT2G01950.1 19000166
AT5G01530.1 TraesCS3B01G115800.1 AT2G01950.1 19000166
AT5G01530.1 TraesCS3D01G099700.1 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G206200.1 Wheat plastid 98.95 98.95
TraesCS2D01G209900.1 Wheat plastid 98.95 98.95
HORVU2Hr1G041270.2 Barley endoplasmic reticulum, plastid 41.26 98.33
GSMUA_AchrUn_... Banana endoplasmic reticulum 46.5 91.1
Os07t0558400-01 Rice plasma membrane, plastid 89.86 88.62
Zm00001d006587_P001 Maize plastid 89.51 87.97
EER99537 Sorghum plastid 88.46 87.85
Zm00001d021763_P001 Maize plastid 88.46 86.94
Solyc09g014520.2.1 Tomato plastid 83.92 84.21
PGSC0003DMT400021871 Potato plastid 83.22 83.51
KRH65776 Soybean nucleus, plastid 83.92 82.76
KRH75874 Soybean mitochondrion, nucleus, plastid 83.57 82.41
AT3G08940.2 Thale cress plastid 81.82 81.53
Bra029732.1-P Field mustard plastid 81.82 81.25
CDY44667 Canola plastid 81.82 81.25
Bra028906.1-P Field mustard plastid 81.47 80.9
CDY04834 Canola plastid 81.12 80.84
CDY53084 Canola plastid 81.47 80.62
AT5G01530.1 Thale cress plastid 81.47 80.34
VIT_08s0007g02190.t01 Wine grape plastid 81.47 68.13
TraesCS7B01G192500.1 Wheat plastid 34.27 40.0
TraesCS2B01G220100.1 Wheat golgi, plastid 33.22 37.25
TraesCS6B01G122700.1 Wheat mitochondrion, plastid 27.27 36.79
TraesCS6B01G122500.1 Wheat cytosol, extracellular, plastid 20.28 36.25
TraesCS5B01G210800.2 Wheat cytosol, plastid 29.37 35.29
TraesCS5B01G227900.1 Wheat plastid 30.07 35.1
TraesCS1B01G317500.1 Wheat plastid 18.53 34.64
TraesCS5B01G463000.1 Wheat plastid 31.82 34.21
TraesCS1B01G432700.1 Wheat plastid 31.82 34.21
TraesCS5B01G462800.1 Wheat plastid 31.82 34.21
TraesCS5B01G353200.1 Wheat plastid 31.47 33.96
TraesCS1B01G451100.1 Wheat plastid 31.82 33.96
TraesCS5B01G463100.1 Wheat plastid 31.47 33.83
TraesCS1B01G388500.1 Wheat plastid 31.12 33.58
TraesCS6B01G350500.1 Wheat plastid 30.07 33.46
TraesCS6B01G122800.1 Wheat plastid 31.12 33.46
TraesCS7B01G103400.1 Wheat plastid 31.12 33.46
TraesCS7B01G103300.1 Wheat plastid 31.12 33.46
TraesCS6B01G122600.1 Wheat plastid 30.77 33.08
TraesCS1B01G433300.1 Wheat plastid 30.77 33.08
TraesCS2B01G340300.1 Wheat plastid 29.37 32.94
TraesCS1B01G388300.1 Wheat plastid 30.42 32.83
TraesCS1B01G388200.1 Wheat plastid 30.42 32.83
TraesCS4B01G089500.1 Wheat mitochondrion, plastid 31.82 31.82
TraesCS5B01G322900.1 Wheat plastid 28.67 31.18
TraesCS6B01G191500.1 Wheat plastid 28.32 30.11
TraesCS5B01G462900.1 Wheat plastid 21.33 29.9
TraesCS6B01G312900.1 Wheat plastid 15.04 29.66
TraesCS5B01G175000.1 Wheat plastid 30.07 27.83
Protein Annotations
EnsemblPlants:TraesCS2B01G233400.1EnsemblPlantsGene:TraesCS2B01G233400Gene3D:1.10.3460.10GO:GO:0005575GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009765GO:GO:0009987GO:GO:0015979GO:GO:0016020InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sfInterPro:IPR023329PANTHER:PTHR21649PANTHER:PTHR21649:SF6PFAM:PF00504
SEG:segSUPFAM:SSF103511MapMan:1.1.1.1.2:::
Description
No Description!
Coordinates
chr2B:+:231972789..231973735
Molecular Weight (calculated)
31138.1 Da
IEP (calculated)
4.976
GRAVY (calculated)
-0.092
Length
286 amino acids
Sequence
(BLAST)
001: MASSVAAAAS TFLGTRLADP APQNGRIVAR FGFGKKKAPP KKAKAPPTTD RPLWFPGAQA PEYLDGTLVG DYGFDPFGLG KPAEYLQYDV DSLDQNLAQN
101: LAGEIIGTRF EDADVKSTPF QPYAEVFGLQ RFRECELIHG RWAMLATLGA LTVEWLTGVT WQDAGKVELV DGSSYLGQPL PFTLTTLIWI EVLVIGYIEF
201: QRNAELDPER RLYPGGSYFD PLGLAADPVK KETLQLAEIK HARLAMVAFL GFAVQAAATG KGPLNNWATH LSDPLHTTIF DTFGSS
Best Arabidopsis Sequence Match ( AT3G08940.2 )
(BLAST)
001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS
Arabidopsis Description
LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.