Factsheet for TraesCS1B01G388200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G078380.1	Barley	plastid	98.11	98.11
TraesCS1D01G374900.1	Wheat	plastid	98.11	98.11
TraesCSU01G167700.1	Wheat	plastid	97.74	97.74
TraesCS1B01G388500.1	Wheat	plastid	97.36	97.36
TraesCS1B01G388300.1	Wheat	plastid	96.98	96.98
TraesCS5B01G463000.1	Wheat	plastid	95.47	95.11
TraesCS5B01G463100.1	Wheat	plastid	95.47	95.11
TraesCS6B01G122700.1	Wheat	mitochondrion, plastid	75.85	94.81
TraesCS7B01G103300.1	Wheat	plastid	94.72	94.36
TraesCS5B01G462800.1	Wheat	plastid	94.72	94.36
TraesCS6B01G122800.1	Wheat	plastid	94.72	94.36
TraesCS1B01G433300.1	Wheat	plastid	94.34	93.98
TraesCS1B01G432700.1	Wheat	plastid	94.34	93.98
TraesCS6B01G122600.1	Wheat	plastid	93.58	93.23
TraesCS7B01G103400.1	Wheat	plastid	93.58	93.23
TraesCS5B01G462900.1	Wheat	plastid	71.7	93.14
TraesCS6B01G122500.1	Wheat	cytosol, extracellular, plastid	55.85	92.5
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	46.42	92.48
TraesCS1B01G317500.1	Wheat	plastid	52.45	90.85
TraesCS5B01G353200.1	Wheat	plastid	89.43	89.43
VIT_19s0014g00160.t01	Wine grape	plastid	88.68	88.02
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	88.3	87.64
VIT_10s0003g02900.t01	Wine grape	plastid	87.17	87.5
VIT_10s0003g02890.t01	Wine grape	plastid	86.79	87.12
VIT_12s0028g00320.t01	Wine grape	plastid	86.79	85.19
VIT_07s0005g02220.t01	Wine grape	plastid	84.15	84.79
PGSC0003DMT400034902	Potato	plastid	41.51	83.97
GSMUA_Achr4P07890_001	Banana	plastid	47.92	79.87
TraesCS5B01G322900.1	Wheat	plastid	73.96	74.52
TraesCS1B01G451100.1	Wheat	plastid	67.17	66.42
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	44.91	41.61
TraesCS5B01G175000.1	Wheat	plastid	43.4	37.22
TraesCS7B01G192500.1	Wheat	plastid	33.58	36.33
TraesCS2B01G220100.1	Wheat	golgi, plastid	33.96	35.29
TraesCS6B01G350500.1	Wheat	plastid	33.96	35.02
TraesCS5B01G210800.2	Wheat	cytosol, plastid	30.57	34.03
TraesCS6B01G191500.1	Wheat	plastid	31.7	31.23
TraesCS5B01G227900.1	Wheat	plastid	28.68	31.02
TraesCS2B01G233400.1	Wheat	plastid	32.83	30.42
TraesCS2B01G340300.1	Wheat	plastid	28.68	29.8
TraesCS6B01G312900.1	Wheat	plastid	15.09	27.59

Protein Annotations

EnsemblPlants:TraesCS1B01G388200.1	EnsemblPlantsGene:TraesCS1B01G388200	Gene3D:1.10.3460.10	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	InterPro:IPR023329	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	PFAM:PF00504
SUPFAM:SSF103511	MapMan:1.1.1.1.1	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:622218327..622219124

Molecular Weight (calculated)

28134.6 Da

IEP (calculated)

5.085

GRAVY (calculated)

0.080

Length

265 amino acids

Sequence
(BLAST)

001: MATTTMSLSS AFAGKSVKNV ASSALLGEAR VTMRKTAAKA KQVSSGSPWY GADRVLYLGP LSGEPPSYLT GEFPGDYGWD TAGLSADPET FAKNRELEVI
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LVHAQSILAI WACQVVLMGA VEGYRVAGGP LGEIVDPLYP GGSFDPLGLA
201: DDPEAFAELK VKEVKNGRLA MFSMFGFFVQ AIVTGKGPLE NLTDHLSDPV NNNAWAFATN FVPGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.