Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol, extracellular, plastid | 98.5 | 98.5 |
| PGSC0003DMT400035006 | Potato | cytosol, extracellular, vacuole | 95.49 | 79.38 |
| PGSC0003DMT400035007 | Potato | cytosol, extracellular, vacuole | 95.49 | 79.38 |
| TraesCS6B01G122500.1 | Wheat | cytosol, extracellular, plastid | 90.23 | 75.0 |
| GSMUA_Achr4P07890_001 | Banana | plastid | 78.95 | 66.04 |
| TraesCS1B01G317500.1 | Wheat | plastid | 72.93 | 63.4 |
| TraesCS1D01G375000.1 | Wheat | plastid | 91.73 | 51.05 |
| VIT_10s0003g02900.t01 | Wine grape | plastid | 99.25 | 50.0 |
| VIT_10s0003g02890.t01 | Wine grape | plastid | 99.25 | 50.0 |
| GSMUA_Achr2P09300_001 | Banana | plasma membrane, plastid, unclear | 97.74 | 48.69 |
| Zm00001d011285_P001 | Maize | plastid | 96.24 | 48.48 |
| EES01022 | Sorghum | plastid | 96.24 | 48.3 |
| TraesCS6B01G122700.1 | Wheat | mitochondrion, plastid | 76.69 | 48.11 |
| Os01t0720500-01 | Rice | plastid | 95.49 | 47.92 |
| TraesCS5D01G464700.1 | Wheat | plastid | 95.49 | 47.74 |
| TraesCS5B01G463100.1 | Wheat | plastid | 95.49 | 47.74 |
| Zm00001d044399_P001 | Maize | plastid | 94.74 | 47.73 |
| Zm00001d044402_P001 | Maize | plastid | 94.74 | 47.73 |
| Zm00001d044401_P001 | Maize | plastid | 94.74 | 47.73 |
| OQU87124 | Sorghum | plastid | 94.74 | 47.73 |
| TraesCS5D01G357600.1 | Wheat | plastid | 94.74 | 47.55 |
| TraesCS5A01G350600.1 | Wheat | plastid | 94.74 | 47.55 |
| TraesCS5B01G353200.1 | Wheat | plastid | 94.74 | 47.55 |
| TraesCS1D01G411600.1 | Wheat | plastid | 94.74 | 47.37 |
| TraesCS5D01G464900.1 | Wheat | plastid | 94.74 | 47.37 |
| TraesCS1B01G433300.1 | Wheat | plastid | 94.74 | 47.37 |
| TraesCS1B01G432700.1 | Wheat | plastid | 94.74 | 47.37 |
| TraesCS5A01G454300.1 | Wheat | plastid | 94.74 | 47.37 |
| TraesCS1A01G403300.1 | Wheat | plastid | 94.74 | 47.37 |
| TraesCS5B01G463000.1 | Wheat | plastid | 94.74 | 47.37 |
| TraesCS6D01G088800.1 | Wheat | plastid | 94.74 | 47.37 |
| TraesCS5B01G462800.1 | Wheat | plastid | 94.74 | 47.37 |
| Zm00001d044396_P001 | Maize | plastid | 93.98 | 47.35 |
| TraesCSU01G167700.1 | Wheat | plastid | 93.98 | 47.17 |
| TraesCS1D01G375100.1 | Wheat | plastid | 93.98 | 47.17 |
| TraesCS5A01G454200.1 | Wheat | plastid | 93.98 | 46.99 |
| TraesCS1A01G403800.1 | Wheat | plastid | 93.98 | 46.99 |
| TraesCS5D01G464800.1 | Wheat | plastid | 93.98 | 46.99 |
| TraesCS6B01G122800.1 | Wheat | plastid | 93.98 | 46.99 |
| TraesCS6A01G093700.1 | Wheat | plastid | 93.98 | 46.99 |
| TraesCS6A01G094300.1 | Wheat | plastid | 93.98 | 46.99 |
| TraesCS1D01G411300.1 | Wheat | plastid | 93.98 | 46.99 |
| TraesCS1B01G388300.1 | Wheat | plastid | 93.23 | 46.79 |
| TraesCS1D01G374900.1 | Wheat | plastid | 93.23 | 46.79 |
| TraesCSU01G250000.1 | Wheat | plastid | 93.23 | 46.62 |
| TraesCS7D01G199400.1 | Wheat | plastid | 93.23 | 46.62 |
| TraesCS6D01G088600.1 | Wheat | plastid | 93.23 | 46.62 |
| TraesCS7A01G238400.1 | Wheat | plastid | 93.23 | 46.62 |
| TraesCS7B01G103300.1 | Wheat | plastid | 93.23 | 46.62 |
| TraesCS1B01G388500.1 | Wheat | plastid | 92.48 | 46.42 |
| TraesCS1B01G388200.1 | Wheat | plastid | 92.48 | 46.42 |
| TraesCS6A01G094100.1 | Wheat | plastid | 92.48 | 46.24 |
| TraesCS7B01G103400.1 | Wheat | plastid | 92.48 | 46.24 |
| TraesCS6B01G122600.1 | Wheat | plastid | 91.73 | 45.86 |
| TraesCS7D01G199500.1 | Wheat | plastid | 91.73 | 45.86 |
| GSMUA_Achr4P33040_001 | Banana | plastid, unclear | 90.98 | 45.83 |
| TraesCS6A01G094600.1 | Wheat | plastid | 87.22 | 45.31 |
| TraesCS7A01G237100.1 | Wheat | plastid | 90.23 | 45.11 |
| TraesCS5B01G462900.1 | Wheat | plastid | 67.67 | 44.12 |
| GSMUA_AchrUn_... | Banana | plastid | 75.19 | 43.29 |
| GSMUA_Achr1P08770_001 | Banana | plastid, unclear | 76.69 | 42.32 |
| TraesCS6A01G094500.1 | Wheat | plastid | 93.23 | 40.66 |
| TraesCS6D01G088700.1 | Wheat | plastid | 68.42 | 39.57 |
| TraesCS6A01G094200.1 | Wheat | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 93.98 | 38.23 |
| TraesCS6A01G094400.1 | Wheat | plastid | 93.98 | 37.54 |
| HORVU1Hr1G088930.2 | Barley | endoplasmic reticulum | 33.08 | 37.29 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 33.83 | 30.82 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, plastid | 16.54 | 23.16 |
| GSMUA_Achr6P20660_001 | Banana | mitochondrion | 34.59 | 22.44 |
| KXG33266 | Sorghum | extracellular | 37.59 | 21.64 |
| GSMUA_Achr6P12670_001 | Banana | plasma membrane | 45.11 | 21.51 |
| GSMUA_Achr10P... | Banana | unclear | 23.31 | 20.81 |
| GSMUA_Achr3P02780_001 | Banana | plastid | 45.11 | 20.69 |
| GSMUA_Achr6P31940_001 | Banana | plastid | 36.84 | 20.33 |
| GSMUA_Achr2P06350_001 | Banana | unclear | 36.84 | 20.33 |
| GSMUA_Achr9P01470_001 | Banana | endoplasmic reticulum | 36.84 | 19.68 |
| TraesCS1D01G375200.1 | Wheat | plastid | 22.56 | 19.48 |
| GSMUA_Achr10P... | Banana | plastid | 42.11 | 19.44 |
| GSMUA_Achr8P03720_001 | Banana | plasma membrane, plastid, unclear | 35.34 | 19.18 |
| GSMUA_Achr9P27480_001 | Banana | mitochondrion | 45.11 | 18.63 |
| GSMUA_Achr9P02810_001 | Banana | plastid | 33.83 | 18.52 |
| GSMUA_Achr7P13020_001 | Banana | plastid | 37.59 | 18.38 |
| GSMUA_Achr3P04110_001 | Banana | plastid | 36.84 | 17.88 |
| PGSC0003DMT400034902 | Potato | plastid | 17.29 | 17.56 |
| GSMUA_Achr2P14960_001 | Banana | plastid | 32.33 | 17.13 |
| GSMUA_Achr4P24090_001 | Banana | unclear | 30.08 | 15.87 |
| GSMUA_Achr9P18200_001 | Banana | plastid | 7.52 | 7.3 |
Protein Annotations
| Gene3D:1.10.3460.10 | MapMan:35.1 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 |
| GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 | GO:GO:0009987 | GO:GO:0015979 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr5G09230_001 |
| EnsemblPlants:GSMUA_Achr5P09230_001 | EnsemblPlants:GSMUA_Achr5T09230_001 | InterPro:IPR023329 | UniProt:M0SX02 | PFAM:PF00504 | PANTHER:PTHR21649 |
| PANTHER:PTHR21649:SF25 | SUPFAM:SSF103511 | UniParc:UPI0002954F95 | : | : | : |
Description
Chlorophyll a-b binding protein 40, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G09230_001]
Coordinates
chr5:+:6714278..6714957
Molecular Weight (calculated)
14160.3 Da
IEP (calculated)
6.505
GRAVY (calculated)
0.366
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGALGCVFP ELLSRNGVKF GEAVWFKAGA QIFSDGGLDY LGNPSLIHAQ SILAIWACQV ILMGAVEGYR IAGGPLGEVK EIKNGRLAMF SMFGFFVQAI
101: VTGKGPLENL ADHLADPVNN NAWAYATNFV PGK
101: VTGKGPLENL ADHLADPVNN NAWAYATNFV PGK
001: MAASTMALSS PALTGKAVKL SPAASEVFGT GRITMRKASK PTGPSGSPWY GSDRVKYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HSRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSD GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: ATDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK
101: HSRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSD GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: ATDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK
Arabidopsis Description
LHB1B1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39142]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.