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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 22160430
golgi: 25769308
unclear: 25769308
msms PMID: 22160430 doi
AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G357600.1 Wheat plastid 100.0 100.0
TraesCS5B01G353200.1 Wheat plastid 99.62 99.62
HORVU5Hr1G087250.1 Barley plastid 99.62 99.25
HORVU5Hr1G124160.1 Barley plastid 99.62 99.25
GSMUA_Achr5P09230_001 Banana cytosol, extracellular, plastid 47.55 94.74
TraesCS1A01G306600.1 Wheat plastid 92.45 92.45
TraesCS5A01G454200.1 Wheat plastid 92.08 91.73
Zm00001d044402_P001 Maize plastid 91.32 91.67
Zm00001d044401_P001 Maize plastid 91.32 91.67
Zm00001d044399_P001 Maize plastid 91.32 91.67
Zm00001d011285_P001 Maize plastid 91.32 91.67
TraesCS5A01G454400.1 Wheat mitochondrion, plastid 57.74 91.62
Os01t0720500-01 Rice plastid 91.32 91.32
Zm00001d044396_P001 Maize plastid 90.94 91.29
EES01022 Sorghum plastid 90.94 90.94
TraesCS7A01G276400.1 Wheat plastid 89.06 90.77
TraesCS5A01G454300.1 Wheat plastid 90.94 90.6
TraesCS1A01G403300.1 Wheat plastid 90.94 90.6
OQU87124 Sorghum plastid 90.19 90.53
TraesCS7A01G238400.1 Wheat plastid 90.19 89.85
TraesCS6A01G094300.1 Wheat plastid 90.19 89.85
TraesCS1A01G403800.1 Wheat plastid 89.43 89.1
TraesCS6A01G094100.1 Wheat plastid 89.06 88.72
TraesCS6A01G094600.1 Wheat plastid 85.66 88.67
VIT_10s0003g02900.t01 Wine grape plastid 88.3 88.64
VIT_10s0003g02890.t01 Wine grape plastid 88.3 88.64
GSMUA_Achr2P09300_001 Banana plasma membrane, plastid, unclear 88.68 88.02
TraesCS6A01G093700.1 Wheat plastid 88.3 87.97
VIT_19s0014g00160.t01 Wine grape plastid 87.55 86.89
TraesCS7A01G237100.1 Wheat plastid 87.17 86.84
VIT_07s0005g02220.t01 Wine grape plastid 84.91 85.55
VIT_12s0028g00320.t01 Wine grape plastid 85.28 83.7
GSMUA_Achr4P07890_001 Banana plastid 49.43 82.39
PGSC0003DMT400034902 Potato plastid 39.25 79.39
TraesCS6A01G094500.1 Wheat plastid 89.81 78.03
TraesCS5A01G322500.1 Wheat plastid 74.72 75.29
TraesCS6A01G094200.1 Wheat endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole 89.43 72.48
TraesCS6A01G094400.1 Wheat plastid 90.57 72.07
TraesCS2A01G204800.1 Wheat plastid 68.3 67.54
TraesCS4A01G226900.2 Wheat mitochondrion, plastid 46.79 43.06
TraesCS5A01G177700.1 Wheat plastid 44.15 37.74
TraesCS7A01G227100.1 Wheat plastid 33.96 36.44
TraesCS2A01G187200.1 Wheat plastid 34.72 35.8
TraesCS6A01G319700.1 Wheat plastid 33.58 35.04
TraesCS5A01G229300.1 Wheat mitochondrion, plastid 29.81 32.24
TraesCS5A01G213000.1 Wheat plastid 32.83 31.87
TraesCS2A01G206200.1 Wheat plastid 34.34 31.82
TraesCS6A01G159800.1 Wheat plastid 31.7 31.23
TraesCS2A01G342600.1 Wheat plastid 28.68 29.8
Protein Annotations
EnsemblPlants:TraesCS5A01G350600.1EnsemblPlantsGene:TraesCS5A01G350600Gene3D:1.10.3460.10GO:GO:0005575GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009765GO:GO:0009987GO:GO:0015979GO:GO:0016020InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sfInterPro:IPR023329PANTHER:PTHR21649PANTHER:PTHR21649:SF56PFAM:PF00504
SUPFAM:SSF103511MapMan:1.1.1.1.1::::
Description
No Description!
Coordinates
chr5A:+:553420891..553421688
Molecular Weight (calculated)
28020.6 Da
IEP (calculated)
5.085
GRAVY (calculated)
0.085
Length
265 amino acids
Sequence
(BLAST)
001: MAAATMALSS PAMAGTPVKA SRAAPFGEGR ITMRKTAGKP KVAASSSPWY GSDRVLYLGP LSGDPPSYLT GEFPGDYGWD TAGLSADPET FAKNRELEVI
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LVHAQSILAI WACQVVLMGA VEGYRVAGGP LGEIVDPLYP GGSFDPLGLA
201: EDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK
Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)
001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
Arabidopsis Description
LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.