Factsheet for TraesCS6A01G094400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G016880.1	Barley	plastid	79.28	99.25
TraesCSU01G250000.1	Wheat	plastid	78.08	97.74
TraesCS6A01G094600.1	Wheat	plastid	75.08	97.66
TraesCS6A01G094300.1	Wheat	plastid	77.48	96.99
TraesCS6D01G088600.1	Wheat	plastid	77.48	96.99
HORVU7Hr1G040370.1	Barley	plastid	76.58	95.86
TraesCS6A01G093700.1	Wheat	plastid	76.58	95.86
TraesCS6A01G094500.1	Wheat	plastid	86.79	94.75
TraesCS5A01G454200.1	Wheat	plastid	75.68	94.74
TraesCS6A01G094100.1	Wheat	plastid	75.68	94.74
TraesCS1A01G403800.1	Wheat	plastid	75.38	94.36
TraesCS7A01G238400.1	Wheat	plastid	75.38	94.36
TraesCS5A01G454300.1	Wheat	plastid	75.08	93.98
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	37.54	93.98
TraesCS1A01G403300.1	Wheat	plastid	75.08	93.98
TraesCS5A01G454400.1	Wheat	mitochondrion, plastid	46.85	93.41
HORVU6Hr1G016890.6	Barley	plastid	81.08	93.1
TraesCS7A01G237100.1	Wheat	plastid	72.67	90.98
Os01t0720500-01	Rice	plastid	72.37	90.94
TraesCS5A01G350600.1	Wheat	plastid	72.07	90.57
TraesCS7A01G276400.1	Wheat	plastid	70.57	90.38
TraesCS1A01G306600.1	Wheat	plastid	71.17	89.43
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	71.17	88.76
VIT_19s0014g00160.t01	Wine grape	plastid	70.57	88.02
VIT_10s0003g02900.t01	Wine grape	plastid	69.67	87.88
VIT_10s0003g02890.t01	Wine grape	plastid	69.67	87.88
PGSC0003DMT400034902	Potato	plastid	33.63	85.5
VIT_12s0028g00320.t01	Wine grape	plastid	68.77	84.81
VIT_07s0005g02220.t01	Wine grape	plastid	66.97	84.79
TraesCS6A01G094200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	83.18	84.71
GSMUA_Achr4P07890_001	Banana	plastid	39.34	82.39
TraesCS5A01G322500.1	Wheat	plastid	58.86	74.52
TraesCS2A01G204800.1	Wheat	plastid	52.85	65.67
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	36.04	41.67
TraesCS5A01G177700.1	Wheat	plastid	34.53	37.1
TraesCS7A01G227100.1	Wheat	plastid	27.33	36.84
TraesCS6A01G319700.1	Wheat	plastid	27.33	35.83
TraesCS2A01G187200.1	Wheat	plastid	27.03	35.02
TraesCS5A01G213000.1	Wheat	plastid	26.43	32.23
TraesCS2A01G206200.1	Wheat	plastid	27.03	31.47
TraesCS6A01G159800.1	Wheat	plastid	24.92	30.86
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	22.52	30.61
TraesCS2A01G342600.1	Wheat	plastid	22.82	29.8

Protein Annotations

EnsemblPlants:TraesCS6A01G094400.1	EnsemblPlantsGene:TraesCS6A01G094400	Gene3D:1.10.3460.10	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	InterPro:IPR023329	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	PFAM:PF00504
SEG:seg	SUPFAM:SSF103511	MapMan:1.1.1.1.1	:	:	:

Description

No Description!

Coordinates

chr6A:+:61414736..61415737

Molecular Weight (calculated)

35916.9 Da

IEP (calculated)

5.317

GRAVY (calculated)

0.099

Length

333 amino acids

Sequence
(BLAST)

001: MQHQWQQSSR FFSLSLFILS DYTPNGFHVT PPSALSSHLP LFYQVISTLT HLLENPYSTA DTFLSFPMAA ATMSLSSSTF AGKAVKNVPS LALFGEARVT
101: MRKTAAKAKQ VSSGSPWYGA DRVLYLGPLS GEPPSYLTGE FPGDYGWDTA GLSADPETFA KNRELEVIHC RWAMLGALGC VFPELLARNG VNFGEAVWFK
201: AGSQIFSEGG LDYLGNPSLI HAQSILAIWA CQVVLMGAVE GYRVAGGPLG EIVDPLYPGG SFDPLGLAED PEAFAELKVK EIKNGRLAMF SMFGFFVQAI
301: VTGKGPLENL ADHIADPVNN NAWAFATNFV PGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.