Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G375200.1 | Wheat | plastid | 77.1 | 65.58 |
| TraesCS5B01G462900.1 | Wheat | plastid | 83.97 | 53.92 |
| PGSC0003DMT400034898 | Potato | plastid | 93.89 | 46.95 |
| PGSC0003DMT400034899 | Potato | plastid | 95.42 | 46.82 |
| PGSC0003DMT400034897 | Potato | plastid | 93.13 | 46.56 |
| PGSC0003DMT400034896 | Potato | plastid | 94.66 | 46.44 |
| PGSC0003DMT400043054 | Potato | plastid | 94.66 | 46.44 |
| PGSC0003DMT400034892 | Potato | plastid | 92.37 | 46.18 |
| TraesCS6D01G088700.1 | Wheat | plastid | 80.92 | 46.09 |
| TraesCS1D01G375000.1 | Wheat | plastid | 83.21 | 45.61 |
| PGSC0003DMT400034893 | Potato | plastid | 90.84 | 45.42 |
| PGSC0003DMT400021422 | Potato | plastid | 90.84 | 44.91 |
| PGSC0003DMT400092927 | Potato | plastid | 89.31 | 44.15 |
| PGSC0003DMT400021389 | Potato | plastid | 88.55 | 43.77 |
| PGSC0003DMT400021390 | Potato | plastid | 86.26 | 43.46 |
| VIT_19s0014g00160.t01 | Wine grape | plastid | 87.79 | 43.07 |
| GSMUA_Achr2P09300_001 | Banana | plasma membrane, plastid, unclear | 87.02 | 42.7 |
| PGSC0003DMT400021392 | Potato | plastid | 84.73 | 42.69 |
| HORVU1Hr1G088900.1 | Barley | plastid | 86.26 | 42.48 |
| TraesCS1B01G433300.1 | Wheat | plastid | 86.26 | 42.48 |
| PGSC0003DMT400021391 | Potato | plastid | 83.97 | 42.31 |
| TraesCS6A01G094600.1 | Wheat | plastid | 82.44 | 42.19 |
| HORVU6Hr1G016880.1 | Barley | plastid | 85.5 | 42.11 |
| TraesCS1A01G403800.1 | Wheat | plastid | 85.5 | 42.11 |
| TraesCS5A01G454300.1 | Wheat | plastid | 85.5 | 42.11 |
| TraesCS5B01G463000.1 | Wheat | plastid | 85.5 | 42.11 |
| TraesCS5B01G463100.1 | Wheat | plastid | 85.5 | 42.11 |
| TraesCS5D01G464700.1 | Wheat | plastid | 85.5 | 42.11 |
| TraesCS6D01G088800.1 | Wheat | plastid | 85.5 | 42.11 |
| TraesCSU01G167700.1 | Wheat | plastid | 84.73 | 41.89 |
| HORVU1Hr1G088880.1 | Barley | plastid | 84.73 | 41.73 |
| HORVU5Hr1G109250.1 | Barley | plastid | 84.73 | 41.73 |
| HORVU6Hr1G091660.1 | Barley | plastid | 84.73 | 41.73 |
| TraesCS1A01G403300.1 | Wheat | plastid | 84.73 | 41.73 |
| TraesCS1B01G432700.1 | Wheat | plastid | 84.73 | 41.73 |
| TraesCS1D01G411300.1 | Wheat | plastid | 84.73 | 41.73 |
| TraesCS1D01G411600.1 | Wheat | plastid | 84.73 | 41.73 |
| TraesCS5D01G464800.1 | Wheat | plastid | 84.73 | 41.73 |
| TraesCSU01G250000.1 | Wheat | plastid | 84.73 | 41.73 |
| HORVU1Hr1G078380.1 | Barley | plastid | 83.97 | 41.51 |
| TraesCS1B01G388200.1 | Wheat | plastid | 83.97 | 41.51 |
| HORVU6Hr1G016850.1 | Barley | plastid | 83.97 | 41.35 |
| HORVU7Hr1G040370.1 | Barley | plastid | 83.97 | 41.35 |
| TraesCS5A01G454200.1 | Wheat | plastid | 83.97 | 41.35 |
| TraesCS5B01G462800.1 | Wheat | plastid | 83.97 | 41.35 |
| TraesCS5D01G464900.1 | Wheat | plastid | 83.97 | 41.35 |
| TraesCS6A01G093700.1 | Wheat | plastid | 83.97 | 41.35 |
| TraesCS6A01G094100.1 | Wheat | plastid | 83.97 | 41.35 |
| TraesCS6A01G094300.1 | Wheat | plastid | 83.97 | 41.35 |
| TraesCS6B01G122800.1 | Wheat | plastid | 83.97 | 41.35 |
| TraesCS7B01G103400.1 | Wheat | plastid | 83.97 | 41.35 |
| VIT_10s0003g02890.t01 | Wine grape | plastid | 83.21 | 41.29 |
| VIT_10s0003g02900.t01 | Wine grape | plastid | 83.21 | 41.29 |
| TraesCS1D01G374900.1 | Wheat | plastid | 83.21 | 41.13 |
| TraesCS1D01G375100.1 | Wheat | plastid | 83.21 | 41.13 |
| TraesCS6D01G088600.1 | Wheat | plastid | 83.21 | 40.98 |
| TraesCS7A01G238400.1 | Wheat | plastid | 83.21 | 40.98 |
| TraesCS7B01G103300.1 | Wheat | plastid | 83.21 | 40.98 |
| TraesCS1B01G388500.1 | Wheat | plastid | 82.44 | 40.75 |
| TraesCS7D01G199400.1 | Wheat | plastid | 82.44 | 40.6 |
| VIT_12s0028g00320.t01 | Wine grape | plastid | 83.21 | 40.37 |
| TraesCS6B01G122700.1 | Wheat | mitochondrion, plastid | 64.89 | 40.09 |
| TraesCS1B01G388300.1 | Wheat | plastid | 80.92 | 40.0 |
| TraesCS7D01G199500.1 | Wheat | plastid | 80.92 | 39.85 |
| TraesCS6B01G122600.1 | Wheat | plastid | 80.15 | 39.47 |
| OQU87124 | Sorghum | plastid | 79.39 | 39.39 |
| EES01022 | Sorghum | plastid | 79.39 | 39.25 |
| TraesCS5A01G350600.1 | Wheat | plastid | 79.39 | 39.25 |
| TraesCS5D01G357600.1 | Wheat | plastid | 79.39 | 39.25 |
| HORVU6Hr1G091650.1 | Barley | plastid | 84.73 | 39.08 |
| Zm00001d011285_P001 | Maize | plastid | 78.63 | 39.02 |
| TraesCS5B01G353200.1 | Wheat | plastid | 78.63 | 38.87 |
| VIT_07s0005g02220.t01 | Wine grape | plastid | 77.86 | 38.78 |
| HORVU5Hr1G087250.1 | Barley | plastid | 78.63 | 38.72 |
| HORVU5Hr1G124160.1 | Barley | plastid | 78.63 | 38.72 |
| PGSC0003DMT400022698 | Potato | plastid | 90.08 | 38.69 |
| PGSC0003DMT400019031 | Potato | plastid | 96.18 | 38.41 |
| HORVU1Hr1G088870.2 | Barley | plastid | 84.73 | 38.41 |
| TraesCS7A01G237100.1 | Wheat | plastid | 77.86 | 38.35 |
| Zm00001d044396_P001 | Maize | plastid | 77.1 | 38.26 |
| Zm00001d044399_P001 | Maize | plastid | 77.1 | 38.26 |
| Zm00001d044401_P001 | Maize | plastid | 77.1 | 38.26 |
| Zm00001d044402_P001 | Maize | plastid | 77.1 | 38.26 |
| HORVU1Hr1G088920.3 | Barley | plastid | 86.26 | 38.18 |
| HORVU6Hr1G016890.6 | Barley | plastid | 83.97 | 37.93 |
| GSMUA_Achr4P07890_001 | Banana | plastid | 44.27 | 36.48 |
| TraesCS6A01G094500.1 | Wheat | plastid | 83.97 | 36.07 |
| HORVU1Hr1G089180.1 | Barley | plastid | 86.26 | 35.65 |
| HORVU7Hr1G040380.1 | Barley | plastid | 82.44 | 34.62 |
| HORVU5Hr1G109260.4 | Barley | plastid | 84.73 | 34.26 |
| HORVU5Hr1G109360.1 | Barley | plastid | 84.73 | 34.26 |
| TraesCS6A01G094200.1 | Wheat | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 83.97 | 33.64 |
| TraesCS6A01G094400.1 | Wheat | plastid | 85.5 | 33.63 |
| PGSC0003DMT400010985 | Potato | plastid | 65.65 | 32.45 |
| PGSC0003DMT400015740 | Potato | plastid | 65.65 | 32.45 |
| PGSC0003DMT400034894 | Potato | plastid | 47.33 | 31.79 |
| PGSC0003DMT400049550 | Potato | plastid | 58.78 | 29.39 |
| PGSC0003DMT400022072 | Potato | plastid | 58.78 | 29.06 |
| KXG33266 | Sorghum | extracellular | 48.85 | 27.71 |
| PGSC0003DMT400068129 | Potato | plastid | 44.27 | 20.35 |
| GSMUA_Achr5P09230_001 | Banana | cytosol, extracellular, plastid | 17.56 | 17.29 |
| PGSC0003DMT400060313 | Potato | plastid | 29.01 | 15.45 |
| PGSC0003DMT400025715 | Potato | plastid | 37.4 | 15.41 |
| PGSC0003DMT400035006 | Potato | cytosol, extracellular, vacuole | 18.32 | 15.0 |
| PGSC0003DMT400035007 | Potato | cytosol, extracellular, vacuole | 18.32 | 15.0 |
| PGSC0003DMT400020100 | Potato | plastid | 30.53 | 14.65 |
| PGSC0003DMT400054836 | Potato | plastid | 30.53 | 14.65 |
| PGSC0003DMT400059995 | Potato | plastid | 27.48 | 14.63 |
| PGSC0003DMT400007514 | Potato | plastid | 29.01 | 14.62 |
| PGSC0003DMT400083158 | Potato | plastid | 27.48 | 14.4 |
| PGSC0003DMT400050232 | Potato | plastid | 27.48 | 14.34 |
| PGSC0003DMT400032790 | Potato | plastid | 27.48 | 14.06 |
| PGSC0003DMT400032791 | Potato | plastid | 27.48 | 14.06 |
| TraesCS6B01G122500.1 | Wheat | cytosol, extracellular, plastid | 16.79 | 13.75 |
| PGSC0003DMT400021871 | Potato | plastid | 28.24 | 12.98 |
| PGSC0003DMT400011381 | Potato | plastid | 22.9 | 11.28 |
| PGSC0003DMT400037285 | Potato | extracellular, vacuole | 7.63 | 6.41 |
Protein Annotations
| Gene3D:1.10.3460.10 | MapMan:35.1 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 |
| GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 | GO:GO:0009987 | GO:GO:0015979 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | InterPro:IPR023329 |
| UniProt:M1B1H5 | PFAM:PF00504 | EnsemblPlantsGene:PGSC0003DMG401013418 | PGSC:PGSC0003DMG401013418 | EnsemblPlants:PGSC0003DMT400034902 | PANTHER:PTHR21649 |
| PANTHER:PTHR21649:SF56 | SUPFAM:SSF103511 | UniParc:UPI000296DA97 | SEG:seg | : | : |
Description
Chlorophyll a-b binding protein 3C, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG401013418]
Coordinates
chr3:+:779614..780587
Molecular Weight (calculated)
13829.4 Da
IEP (calculated)
8.703
GRAVY (calculated)
-0.212
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASTMSLSS SSFAGKAVKL SPSSSEITGN GRVTMRKTAT KAKPASSGSP WYGPDRVKYL GPFSGEAPSY LTGEFPGDYG WDTAGLSADP ETFAKNRELE
101: VIHCRWAMLG ALGCVFPELL ARNGVKFGEA V
101: VIHCRWAMLG ALGCVFPELL ARNGVKFGEA V
001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
Arabidopsis Description
LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.