Factsheet for TraesCS1D01G375000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	51.05	91.73
TraesCSU01G167700.1	Wheat	plastid	98.74	89.06
HORVU1Hr1G078380.1	Barley	plastid	98.33	88.68
TraesCS1B01G388300.1	Wheat	plastid	98.33	88.68
TraesCS1D01G374900.1	Wheat	plastid	97.91	88.3
TraesCS1D01G375100.1	Wheat	plastid	97.07	87.55
TraesCS6D01G088800.1	Wheat	plastid	95.82	86.09
TraesCS1D01G411300.1	Wheat	plastid	95.4	85.71
TraesCS6D01G088600.1	Wheat	plastid	94.56	84.96
TraesCS5D01G464700.1	Wheat	plastid	94.56	84.96
TraesCS1D01G411600.1	Wheat	plastid	93.72	84.21
TraesCS5D01G464900.1	Wheat	plastid	93.72	84.21
TraesCS5D01G464800.1	Wheat	plastid	93.72	84.21
TraesCS7D01G199400.1	Wheat	plastid	93.72	84.21
PGSC0003DMT400034902	Potato	plastid	45.61	83.21
TraesCS1D01G375200.1	Wheat	plastid	53.56	83.12
TraesCS7D01G199500.1	Wheat	plastid	92.05	82.71
TraesCS1D01G306200.1	Wheat	plastid	89.96	81.75
Os01t0720500-01	Rice	plastid	89.54	80.75
TraesCS5D01G357600.1	Wheat	plastid	89.54	80.75
TraesCS6D01G088700.1	Wheat	plastid	77.41	80.43
GSMUA_Achr4P07890_001	Banana	plastid	53.14	79.87
TraesCS7D01G276300.1	Wheat	plastid	87.03	79.69
VIT_10s0003g02900.t01	Wine grape	plastid	87.03	78.79
VIT_10s0003g02890.t01	Wine grape	plastid	86.61	78.41
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	87.45	78.28
VIT_19s0014g00160.t01	Wine grape	plastid	87.45	78.28
VIT_12s0028g00320.t01	Wine grape	plastid	85.77	75.93
VIT_07s0005g02220.t01	Wine grape	plastid	83.26	75.67
TraesCS5D01G329200.1	Wheat	plastid	74.48	67.68
TraesCS1D01G428200.1	Wheat	plastid	66.11	58.96
TraesCS4D01G086400.1	Wheat	plastid	43.51	36.36
TraesCS5D01G182000.1	Wheat	plastid	41.84	32.26
TraesCS7D01G227300.1	Wheat	plastid	33.05	32.24
TraesCS6D01G299200.1	Wheat	plastid	32.64	30.71
TraesCS2D01G200700.1	Wheat	plastid	30.96	29.02
TraesCS5D01G219100.1	Wheat	plastid	32.22	28.0
TraesCS6D01G152700.1	Wheat	golgi	30.13	26.77
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	26.78	26.12
TraesCS2D01G209900.1	Wheat	plastid	30.96	25.87
TraesCS2D01G320900.1	Wheat	plastid	26.36	24.71

Protein Annotations

EnsemblPlants:TraesCS1D01G375000.1	EnsemblPlantsGene:TraesCS1D01G375000	Gene3D:1.10.3460.10	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	InterPro:IPR023329	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	PFAM:PF00504
SUPFAM:SSF103511	MapMan:1.1.1.1.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:452264260..452265057

Molecular Weight (calculated)

25509.6 Da

IEP (calculated)

8.051

GRAVY (calculated)

0.085

Length

239 amino acids

Sequence
(BLAST)

001: MATTTMSLSS TFAGKSVKNV ASSALFGEAR VTMRKTAAKA KQVSSGSPWY GADRVLYLGP LSGDPPSYLT GEFPGDYGWD TAGLSADPET FAKNRELEVI
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LVHAQSILAI WACQVVLMGA VEGYRVAGGP LELKVKEVKN GRLAMFSMFG
201: FFVQAIVTGK GPLENLADHL SDPVNNNAWA FATNFVPGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.