Factsheet for TraesCS1D01G306200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G306600.1	Wheat	plastid	98.48	97.74
TraesCS5D01G357600.1	Wheat	plastid	93.54	92.83
TraesCS5D01G464700.1	Wheat	plastid	93.16	92.11
TraesCS5D01G464900.1	Wheat	plastid	92.4	91.35
TraesCS1D01G374900.1	Wheat	plastid	92.02	91.32
TraesCS7D01G276300.1	Wheat	plastid	90.49	91.19
TraesCS1D01G411300.1	Wheat	plastid	92.02	90.98
TraesCS1D01G411600.1	Wheat	plastid	91.64	90.6
TraesCS1D01G375100.1	Wheat	plastid	91.25	90.57
TraesCS7D01G199400.1	Wheat	plastid	91.25	90.23
TraesCS1D01G375000.1	Wheat	plastid	81.75	89.96
TraesCS6D01G088800.1	Wheat	plastid	90.49	89.47
TraesCS5D01G464800.1	Wheat	plastid	90.49	89.47
TraesCS6D01G088600.1	Wheat	plastid	89.35	88.35
TraesCS7D01G199500.1	Wheat	plastid	88.59	87.59
TraesCS6D01G088700.1	Wheat	plastid	76.05	86.96
TraesCS5D01G329200.1	Wheat	plastid	75.29	75.29
TraesCS1D01G375200.1	Wheat	plastid	41.83	71.43
TraesCS1D01G428200.1	Wheat	plastid	69.2	67.91
TraesCS4D01G086400.1	Wheat	plastid	46.39	42.66
TraesCS5D01G182000.1	Wheat	plastid	44.49	37.74
TraesCS7D01G227300.1	Wheat	plastid	34.98	37.55
TraesCS6D01G299200.1	Wheat	plastid	33.84	35.04
TraesCS2D01G200700.1	Wheat	plastid	33.84	34.9
TraesCS2D01G209900.1	Wheat	plastid	34.22	31.47
TraesCS6D01G152700.1	Wheat	golgi	31.94	31.23
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	28.9	31.02
TraesCS5D01G219100.1	Wheat	plastid	32.32	30.91
TraesCS2D01G320900.1	Wheat	plastid	28.52	29.41

Protein Annotations

EnsemblPlants:TraesCS1D01G306200.1	EnsemblPlantsGene:TraesCS1D01G306200	Gene3D:1.10.3460.10	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	InterPro:IPR023329	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	PFAM:PF00504
SEG:seg	SUPFAM:SSF103511	MapMan:1.1.1.1.1	:	:	:

Description

No Description!

Coordinates

chr1D:-:403335352..403336143

Molecular Weight (calculated)

27808.3 Da

IEP (calculated)

4.897

GRAVY (calculated)

0.128

Length

263 amino acids

Sequence
(BLAST)

001: MAASTMALSS PGLAAAKIIS SNVFGEGRIT MRKTAAKAKP AASSSPWYGP DRVLYLGPLS GDAPSYLTGE FPGDYGWDTA GLSADPETFA KNRELEVIHC
101: RWAMLGALGC VFPELLARNG VKFGEAVWFK AGSQIFSEGG LDYLGNPSLV HAQSILAIWA CQVVLMGAVE GYRVAGGPLG EIVDPLYPGG SFDPLGLADD
201: PEAFAELKVK EIKNGRLAMF SMFGFFVQAI VTGKGPLENL ADHLADPVNN NAWAFATNFV PGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.