Factsheet for TraesCS4D01G086400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	100.0	100.0
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	100.0	99.31
Os11t0242800-01	Rice	plastid	89.51	90.46
HORVU4Hr1G015260.2	Barley	plastid	89.86	89.24
Zm00001d048998_P001	Maize	plastid	87.76	88.69
EES09551	Sorghum	plastid	87.41	88.65
Zm00001d007267_P002	Maize	plastid	87.06	87.99
AT4G10340.1	Thale cress	plastid	79.02	80.71
CDX90755	Canola	plastid	79.02	80.71
CDY60092	Canola	plastid	78.67	80.07
Bra000708.1-P	Field mustard	plastid	78.32	80.0
Bra037913.1-P	Field mustard	plastid	78.32	79.72
CDY05098	Canola	plastid	77.97	79.64
GSMUA_Achr6P12670_001	Banana	plasma membrane	76.92	78.85
Solyc06g063370.2.1	Tomato	plastid	77.62	77.62
PGSC0003DMT400068129	Potato	plastid	77.27	77.54
CDX86864	Canola	plastid	56.64	77.51
GSMUA_Achr3P02780_001	Banana	plastid	78.32	77.24
GSMUA_Achr10P...	Banana	plastid	73.78	73.26
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	79.37	56.47
TraesCS6D01G088700.1	Wheat	plastid	37.76	46.96
TraesCS5D01G357600.1	Wheat	plastid	43.36	46.79
TraesCS1D01G306200.1	Wheat	plastid	42.66	46.39
TraesCS5D01G464700.1	Wheat	plastid	43.01	46.24
TraesCS7D01G276300.1	Wheat	plastid	41.96	45.98
TraesCS1D01G411300.1	Wheat	plastid	42.66	45.86
TraesCS5D01G464900.1	Wheat	plastid	42.66	45.86
TraesCS1D01G374900.1	Wheat	plastid	41.96	45.28
TraesCS1D01G375100.1	Wheat	plastid	41.96	45.28
TraesCS5D01G329200.1	Wheat	plastid	41.61	45.25
TraesCS7D01G199400.1	Wheat	plastid	41.96	45.11
TraesCS5D01G464800.1	Wheat	plastid	41.96	45.11
TraesCS1D01G411600.1	Wheat	plastid	41.96	45.11
TraesCS6D01G088800.1	Wheat	plastid	41.61	44.74
TraesCS6D01G088600.1	Wheat	plastid	41.26	44.36
TraesCS7D01G199500.1	Wheat	plastid	40.56	43.61
TraesCS1D01G375000.1	Wheat	plastid	36.36	43.51
TraesCS1D01G428200.1	Wheat	plastid	40.21	42.91
KRH58809	Soybean	mitochondrion	44.06	39.75
TraesCS1D01G375200.1	Wheat	plastid	20.28	37.66
TraesCS6D01G299200.1	Wheat	plastid	30.42	34.25
TraesCS2D01G200700.1	Wheat	plastid	30.07	33.73
TraesCS5D01G182000.1	Wheat	plastid	35.66	32.9
TraesCS6D01G152700.1	Wheat	golgi	30.42	32.34
TraesCS2D01G209900.1	Wheat	plastid	31.82	31.82
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	26.92	31.43
TraesCS7D01G227300.1	Wheat	plastid	26.57	31.02
TraesCS5D01G219100.1	Wheat	plastid	27.27	28.36
TraesCS2D01G320900.1	Wheat	plastid	23.08	25.88

Protein Annotations

EnsemblPlants:TraesCS4D01G086400.1	EnsemblPlantsGene:TraesCS4D01G086400	Gene3D:1.10.3460.10	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	InterPro:IPR023329	PANTHER:PTHR21649	PANTHER:PTHR21649:SF53	PFAM:PF00504
SEG:seg	SUPFAM:SSF103511	MapMan:1.1.1.1.3	:	:	:

Description

No Description!

Coordinates

chr4D:-:61956431..61957909

Molecular Weight (calculated)

30787.1 Da

IEP (calculated)

5.791

GRAVY (calculated)

-0.003

Length

286 amino acids

Sequence
(BLAST)

001: MAALAPTKML GTRLNFAGSS RYATAAPTAG AQKIVSLFDR FKKKPAPKPK PAPVATSSVG IDDELAKWYG PDRRIYLPNG LLDRSEVPEY LNGEVPGDYG
101: YDPFGLGKKP EDFAKYQAFE LIHARWAMLG AAGFIIPEAL NKFGANCGPE AVWFKTGALL LDGNTLNYFG NSIPINLILA VVAEVVLVGG AEYYRITNGL
201: EFDDKLHPGG PFDPLGLATD PDQAALLKVK EIKNGRLAMF SMLGFFIQAY VTGEGPFENL CAHLSDPFGN NLLTVISGAA ERVPSL

Best Arabidopsis Sequence Match ( AT4G10340.1 )
(BLAST)

001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL

Arabidopsis Description

LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.