CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34336	Soybean	plastid	47.32	52.26
KRG92462	Soybean	nucleus, plastid	47.0	51.74
KRH38736	Soybean	nucleus, plastid	45.43	49.48
PGSC0003DMT400068129	Potato	plastid	44.48	49.47
Solyc06g063370.2.1	Tomato	plastid	44.48	49.3
KRH09238	Soybean	mitochondrion, nucleus, plastid	44.8	49.13
CDX90755	Canola	plastid	42.9	48.57
Bra000708.1-P	Field mustard	plastid	42.59	48.21
AT4G10340.1	Thale cress	plastid	42.59	48.21
CDY05098	Canola	plastid	42.59	48.21
CDY60092	Canola	plastid	42.27	47.69
Bra037913.1-P	Field mustard	plastid	41.32	46.62
Os11t0242800-01	Rice	plastid	40.38	45.23
KRH08634	Soybean	endoplasmic reticulum	17.67	45.16
EES09551	Sorghum	plastid	39.75	44.68
Zm00001d007267_P002	Maize	plastid	39.43	44.17
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	40.06	44.1
TraesCS4D01G086400.1	Wheat	plastid	39.75	44.06
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	39.75	44.06
Zm00001d048998_P001	Maize	plastid	38.8	43.46
HORVU4Hr1G015260.2	Barley	plastid	38.49	42.36
CDX86864	Canola	plastid	21.14	32.06
KRH08669	Soybean	nucleus, plastid	24.29	29.17
KRH08672	Soybean	mitochondrion, nucleus, plastid	24.29	29.17
KRH08676	Soybean	nucleus, plastid	24.29	29.17
KRH42317	Soybean	mitochondrion, nucleus, plastid	23.97	28.9
KRH22164	Soybean	nucleus, plastid	24.29	28.84
KRH58441	Soybean	mitochondrion, plastid	23.66	28.52
KRH27171	Soybean	mitochondrion, nucleus, plastid	23.97	28.36
KRH70280	Soybean	plastid	22.08	28.11
KRH14122	Soybean	nucleus, plastid	22.71	27.17
KRH74003	Soybean	nucleus, plastid	22.4	26.79
KRH08384	Soybean	nucleus, plastid	18.3	23.58
KRH06016	Soybean	plastid	23.97	22.89
KRH14048	Soybean	nucleus, plastid	19.87	22.83
KRH74072	Soybean	mitochondrion, nucleus, plastid	19.87	22.83
KRH70044	Soybean	mitochondrion, nucleus, plastid	17.67	22.76
KRH54568	Soybean	nucleus, plastid	17.98	22.62
KRH63318	Soybean	plastid	17.98	22.62
KRH12566	Soybean	plastid	18.3	22.31
KRH37524	Soybean	plastid	18.3	22.31
KRH06319	Soybean	nucleus, plastid	18.3	21.48
KRH51989	Soybean	nucleus	19.24	21.4
KRH65776	Soybean	nucleus, plastid	18.61	20.34
KRH75874	Soybean	mitochondrion, nucleus, plastid	18.3	20.0
KRH17548	Soybean	cytosol, peroxisome, plastid	12.62	19.8
KRH47742	Soybean	nucleus	17.03	19.15
KRH42185	Soybean	mitochondrion, nucleus, plastid	15.46	18.99
KRH58296	Soybean	plastid	14.2	18.52
KRH68993	Soybean	plastid	17.98	18.51
KRH43915	Soybean	mitochondrion, nucleus, plastid	15.14	18.39
KRG97750	Soybean	plastid	16.09	18.35
KRH10515	Soybean	mitochondrion, nucleus, plastid	14.83	18.08
KRH31130	Soybean	nucleus, plastid	15.77	17.73
KRH61286	Soybean	mitochondrion	6.94	10.05

Protein Annotations

Gene3D:1.10.3460.10	Gene3D:1.20.58.2010	MapMan:35.1	EMBL:ACUP02003292	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_05G149400	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	GO:GO:0065009
InterPro:IPR005512	InterPro:IPR023329	UniProt:K7KQB7	EnsemblPlants:KRH58809	ProteinID:KRH58809	ProteinID:KRH58809.1
PFAM:PF00504	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR21649	PANTHER:PTHR21649:SF16
SUPFAM:SSF103511	UniParc:UPI000294E90F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:34365927..34369714

Molecular Weight (calculated)

34394.8 Da

IEP (calculated)

7.165

GRAVY (calculated)

-0.267

Length

317 amino acids

Sequence
(BLAST)

001: MRCRRRPPAS LRRSPSTVLE THDSCDGDDG RPVVASSPSK TLPARGTTLK GKVYYVVAPA TTAVEWLANY VVAAEILDSF QDTEFWYAEQ GTISGNSTRS
101: RGGSFRRIVQ RKDEKWWLPV PCVHLGGLID KSRKHLNEKR DCANQIHKAA MAINSSALAE MDIPETYMSN LPKHSAAEFS SQDSTDSAAA DCRKVEIADS
201: AAATASKSIL AVVAEIVLVG GAEYYRIING LDLEDKLHPG GPFDPLGLAK DPDQAALLKV KEIKNGRLAM FAMLGFYFQA YVTGEGPVEN LAKHLSDPFG
301: NNLLTVIAGS TERAPTL

Best Arabidopsis Sequence Match ( AT4G10340.1 )
(BLAST)

001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL

Arabidopsis Description

LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.