CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38736	Soybean	nucleus, plastid	98.62	97.94
KRG92462	Soybean	nucleus, plastid	91.35	91.67
KRH34336	Soybean	plastid	90.66	91.29
GSMUA_Achr3P02780_001	Banana	plastid	85.12	84.83
GSMUA_Achr6P12670_001	Banana	plasma membrane	79.93	82.8
GSMUA_Achr10P...	Banana	plastid	81.66	81.94
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	88.24	63.43
KRH58809	Soybean	mitochondrion	49.13	44.8
KRH08634	Soybean	endoplasmic reticulum	19.03	44.35
KRH08669	Soybean	nucleus, plastid	40.48	44.32
KRH08672	Soybean	mitochondrion, nucleus, plastid	40.48	44.32
KRH08676	Soybean	nucleus, plastid	40.48	44.32
KRH42317	Soybean	mitochondrion, nucleus, plastid	39.79	43.73
KRH58441	Soybean	mitochondrion, plastid	39.79	43.73
KRH22164	Soybean	nucleus, plastid	38.75	41.95
KRH14122	Soybean	nucleus, plastid	38.06	41.51
KRH27171	Soybean	mitochondrion, nucleus, plastid	38.41	41.42
KRH74003	Soybean	nucleus, plastid	37.37	40.75
KRH70280	Soybean	plastid	33.22	38.55
KRH06016	Soybean	plastid	39.45	34.34
KRH17548	Soybean	cytosol, peroxisome, plastid	23.88	34.16
KRH12566	Soybean	plastid	30.45	33.85
KRH08384	Soybean	nucleus, plastid	28.72	33.74
KRH70044	Soybean	mitochondrion, nucleus, plastid	28.37	33.33
KRH74072	Soybean	mitochondrion, nucleus, plastid	31.49	32.97
KRH54568	Soybean	nucleus, plastid	28.72	32.94
KRH37524	Soybean	plastid	29.41	32.69
KRH14048	Soybean	nucleus, plastid	31.14	32.61
KRH06319	Soybean	nucleus, plastid	30.45	32.59
KRH63318	Soybean	plastid	28.37	32.54
KRH65776	Soybean	nucleus, plastid	30.45	30.34
KRH75874	Soybean	mitochondrion, nucleus, plastid	30.1	30.0
KRH47742	Soybean	nucleus	28.37	29.08
KRH58296	Soybean	plastid	24.22	28.81
KRG97750	Soybean	plastid	27.68	28.78
KRH31130	Soybean	nucleus, plastid	27.68	28.37
KRH68993	Soybean	plastid	30.1	28.25
KRH42185	Soybean	mitochondrion, nucleus, plastid	24.91	27.91
KRH43915	Soybean	mitochondrion, nucleus, plastid	24.22	26.82
KRH51989	Soybean	nucleus	26.3	26.67
KRH10515	Soybean	mitochondrion, nucleus, plastid	23.88	26.54
KRH61286	Soybean	mitochondrion	12.8	16.89

Protein Annotations

MapMan:1.1.1.1.3	Gene3D:1.10.3460.10	EntrezGene:100789786	UniProt:A0A0R0FSY2	EMBL:ACUP02010275	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_16G205200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	EnsemblPlants:KRH09238	ProteinID:KRH09238
ProteinID:KRH09238.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF53	SUPFAM:SSF103511	UniParc:UPI00018C6A4A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:36617474..36620394

Molecular Weight (calculated)

30756.0 Da

IEP (calculated)

5.793

GRAVY (calculated)

0.017

Length

289 amino acids

Sequence
(BLAST)

001: MASLAASTAA ASLGMSEMLG NPINLSGATR PAPSASSPAS FKTVALFSKK KAAPPKKAAA AAPANDELAK WYGPDRRIFL PEGLLDRSEI PEYLTGEVPG
101: DYGYDPFGLS KKPEDFSKYQ AFELIHARWA MLGAAGFIIP EAFNKYGANC GPEAVWFKTG ALLLDGGTLN YFGKPIPINL IVAVIAEIVL VGGAEYYRII
201: NGLNFEDKLH PGGPFDPLGL ANDPDQAALL KVKEIKNGRL AMFAMLGFYF QAYVTGEGPV ENLAKHLSDP FGNNLLTVIS GSAERAPTL

Best Arabidopsis Sequence Match ( AT4G10340.1 )
(BLAST)

001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL

Arabidopsis Description

LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.