Factsheet for GSMUA_Achr10P16240_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P12670_001	Banana	plasma membrane	84.03	86.74
GSMUA_Achr3P02780_001	Banana	plastid	87.15	86.55
KRG92462	Soybean	nucleus, plastid	82.99	82.99
KRH34336	Soybean	plastid	82.29	82.58
KRH09238	Soybean	mitochondrion, nucleus, plastid	81.94	81.66
KRH38736	Soybean	nucleus, plastid	82.29	81.44
Solyc06g063370.2.1	Tomato	plastid	79.51	80.07
PGSC0003DMT400068129	Potato	plastid	78.82	79.65
AT4G10340.1	Thale cress	plastid	76.04	78.21
Os11t0242800-01	Rice	plastid	76.74	78.09
CDY60092	Canola	plastid	76.04	77.94
CDX90755	Canola	plastid	75.35	77.5
Bra000708.1-P	Field mustard	plastid	75.0	77.14
CDY05098	Canola	plastid	74.65	76.79
EES09551	Sorghum	plastid	74.31	75.89
Bra037913.1-P	Field mustard	plastid	73.96	75.8
Zm00001d007267_P002	Maize	plastid	74.31	75.62
Zm00001d048998_P001	Maize	plastid	74.31	75.62
TraesCS4D01G086400.1	Wheat	plastid	73.26	73.78
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	73.26	73.78
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	73.26	73.26
CDX86864	Canola	plastid	52.43	72.25
HORVU4Hr1G015260.2	Barley	plastid	65.62	65.62
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	84.03	60.2
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	39.24	42.32
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	19.44	42.11
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	19.44	42.11
GSMUA_Achr4P33040_001	Banana	plastid, unclear	37.85	41.29
GSMUA_AchrUn_...	Banana	plastid	31.25	38.96
GSMUA_Achr1P08770_001	Banana	plastid, unclear	31.94	38.17
GSMUA_Achr4P07890_001	Banana	plastid	20.83	37.74
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	29.86	35.1
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	17.71	34.93
GSMUA_Achr9P02810_001	Banana	plastid	29.17	34.57
GSMUA_Achr6P20660_001	Banana	mitochondrion	24.31	34.15
GSMUA_Achr6P31940_001	Banana	plastid	28.12	33.61
GSMUA_Achr2P06350_001	Banana	unclear	27.43	32.78
GSMUA_Achr2P14960_001	Banana	plastid	28.47	32.67
GSMUA_Achr3P04110_001	Banana	plastid	30.9	32.48
GSMUA_Achr9P27480_001	Banana	mitochondrion	35.42	31.68
GSMUA_Achr9P18200_001	Banana	plastid	14.93	31.39
GSMUA_Achr4P24090_001	Banana	unclear	27.43	31.35
GSMUA_Achr7P13020_001	Banana	plastid	28.47	30.15
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	9.72	29.47
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	25.0	28.92
GSMUA_Achr10P...	Banana	unclear	12.5	24.16

Protein Annotations

MapMan:1.1.1.1.3	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr10G16240_001
EnsemblPlants:GSMUA_Achr10P16240_001	EnsemblPlants:GSMUA_Achr10T16240_001	InterPro:IPR023329	UniProt:M0RIP9	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF53	SUPFAM:SSF103511	UniParc:UPI0002962EB9	SEG:seg	:	:

Description

Chlorophyll a-b binding protein CP26, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G16240_001]

Coordinates

chr10:-:23840453..23841724

Molecular Weight (calculated)

30349.5 Da

IEP (calculated)

4.987

GRAVY (calculated)

0.072

Length

288 amino acids

Sequence
(BLAST)

001: MASIAAATAP ASLGASELLG TRLTTAATTR SAPPPSAGSS KIVALFSKKA APPPPKSKPA AVSPADEELA KWYGERIFLP EGLLDRSEIP GYLTGEVPGD
101: YGYDPFGLSK KPEDFAKDVP YELIHARWAM LGAAGFIIPE AFNKFGANCG PEAVWSKTGA LLLDGSTLNY FGKNIPINLV VAVIAEIVLV GGAEYFRIIN
201: GLDLEDKLHP GGPFDPLGLA NDPDQAALLK VKEIKNGRVA MFAMLGFFLQ AYVTGEGPVE NLTRHLSDPF GNNLLTVISG AAERAPTL

Best Arabidopsis Sequence Match ( AT4G10340.1 )
(BLAST)

001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL

Arabidopsis Description

LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.